Ubiquitin Pathway

The conserved protein ubiquitin acts as a signal for degradation in a multienzyme, energy-dependent proteolytic pathway.

Keywords: ubiquitin; ubiquitination; proteolysis; protein degradation; proteasome

Figure 1. Ubiquitin (Ub) pathway. DUB denotes a deubiquitinating enzyme. The symbol ‘~’ denotes a high-energy thioester bond.
Figure 2. 26S proteasome. The representation of the 20S proteasome is based on crystal structures. The representation of the 19S complex is loosely based on electron tomographic images.
Figure 3. The Sic1p-recognizing E3 from yeast (adapted from Hochstrasser, 1998). Cdc4p binds the phosphorylated Sic1p substrate. Skp1p seems to be an adapter that helps Cdc4p bind to the scaffold protein Cdc53p. The E2 (Cdc34p) binds directly to Cdc53p.
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 References
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    Chau V, Tobias JW, Bachmair A et al. (1989) A multiubiquitin chain is confined to specific lysine in a targeted short-lived protein. Science 243: 1576–1583.
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 Further Reading
    Baumeister W, Walz J, Zühl F and Seemüller E (1998) The proteasome: paradigm of a self-compartmentalizing protease. Cell 92: 367–380.
    Ciechanover A, Finley D and Varshavsky A (1984) Selective dependence of selective protein degradation demonstrated in the mammalian cell cycle mutant ts85. Cell 37: 57–66.
    Hershko A, Ciechanover A, Heller H, Haas AL and Rose IA (1980) Proposed role of ATP in protein breakdown: conjugation of proteins with multiple chains of the polypeptide of ATP-dependent proteolysis. Proceedings of the National Academy of Sciences of the USA 77: 1783–1786.
    Hicke L (1997) Ubiquitin-dependent internalization and down-regulation of plasma membrane proteins. FASEB Journal 11: 1215–1226.
    Lam YA, Xu W, DeMartino GN and Cohen RE (1997) Editing of ubiquitin conjugates by an isopeptidase in the 26S proteasome. Nature 385: 737–740.
    Pickart C M (1997) Targeting of substrates to the 26S proteasome. FASEB Journal 11: 1055–1066.
    book Rechsteiner M (ed.) (1988) Ubiquitin. New York: Plenum Press.
    Rock KL, Gramm C, Rothstein L et al. (1994) Inhibitors of the proteasome block the degradation of most cell proteins and the generation of peptides presented on MHC class I molecules. Cell 78: 761–771.
    Sommer T and Wolf D H (1997) Endoplasmic reticulum degradation: reverse protein flow of no return. FASEB Journal 11: 1227–1233.
    Varshavsky A (1996) The N-end rule: functions, mysteries, uses. Proceedings of the National Academy of Sciences of the USA 93: 12142–12149.
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Lam, Y Amy, and Pickart, Cecile M(Apr 2001) Ubiquitin Pathway. In: eLS. John Wiley & Sons Ltd, Chichester. http://www.els.net [doi: 10.1038/npg.els.0000685]