Nucleotides: Uncommon, Modified and Synthetic

Many types of modified nucleotides exist naturally or are the products of laboratory syntheses.

Keywords: nucleic acids; DNA; RNA; oligonucleotides

Figure 1. Representative modified and hypermodified nucleobases found in tRNA: dihydrouridine [I], 5-carboxymethyluridine [II], 2-thiouridine [III], pseudouridine [IV], 5-methylcytidine [V], archaeosine [VI], N1-methylguanosine [VII], N6-dimethallyladenosine [VIII], and wybutosine [IX].
Figure 2. Representative sugar-modified nucleic acids: 4¢,6¢-methano DNA analogue [X], 3¢,5¢-ethano DNA analogue [XI], homo-DNA [XII] and hexitol nucleic acid analogue [XIII].
Figure 3. Representative backbone-modified nucleic acids: peptide nucleic acid [XIV], and morpholino nucleic acids [XV].
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 References
    Adams RLP (1990) DNA methylation. Biochemical Journal 265: 309–320.
    Agris PF (1996) The importance of being modified: roles of modified nucleosides and  Mg2+ in RNA structure and function. Progress in Nucleic Acid Research and Molecular Biology 53: 79–119.
    Christopherson RI and Lyons SD (1990) Potent inhibitors of de novopyrimidine and purine biosynthesis as chemotherapeutic agents. Medicinal Research Reviews 10: 505–548.
    De Clercq E (1994) Antiviral activity spectrum and target of action of different classes of nucleoside analogues. Nucleosides and Nucleotides 13: 1271–1295.
    Egli M (1996) Structural aspects of nucleic acid analogs and antisense oligonucleotides. Angewandte Chemie, International Edition in English 35: 1894–1909.
    Eschenmoser A (1992) Chemistry of potentially prebiological natural products. Chemical Society Reviews 21: 1–16.
    Freier SM and Altmann K-H (1997) The ups and downs of nucleic acid duplex stability: structure–stability studies on chemically-modified DNA:RNA duplexes. Nucleic Acids Research 25: 4429–4443.
    Gommers-Ampt JH and Borst P (1995) Hypermodified bases in DNA. FASEB Journal 9: 1034–1042.
    Kool ET (1997) Preorganization of DNA: design principles for improving nucleic acid recognition by synthetic oligonucleotides. Chemical Reviews 97: 1473–1487.
    McCloskey JA and Crain PF (1998) The RNA modification database–98. Nucleic Acids Research 26: 196–197.
    Nielsen PE and HaaimaG (1997) Peptide nucleic acid (PNA). A DNA mimic with a pseudopeptide backbone. Chemical Society Reviews 26: 73–78.
 Further Reading
    book Adams RLP, Knowler JT and Leader DP (1992) The Biochemistry of the Nucleic Acids, 11th edn. London: Chapman and Hall.
    Bjork GR (1995) Genetic dissection of synthesis and function of modified nucleosides in bacterial transfer RNA. Progress in Nucleic Acid Research and Molecular Biology 50: 263–339.
    De Clercq E (1992) HIV inhibitors targeted at the reverse transcriptase. AIDS Research and Human Retroviruses 8: 119–134.
    Demple B and Harrison L (1994) Repair of oxidative damage to DNA: enzymology and biology. Annual Review of Biochemistry 63: 915–948.
    Englisch U and Gauss DH (1991) Chemically modified oligonucleotides as probes and inhibitors. Angewandte Chemie, International Edition in English 30: 613–629.
    Eschenmoser A (1992) Chemistry of potentially prebiological natural products. Chemical Society Reviews 21: 1–16.
    Herdewijn P (1996) Targeting RNA with conformationally restricted oligonucleotides. Liebigs Annalen September: 1337–1348.
    Huryn DM and Okabe M (1992) AIDS-driven nucleoside chemistry. Chemical Reviews 92: 1745–1768.
    Isono K (1991) Current progress on nucleoside antibiotics. Pharmacology and Therapeutics 52: 269–286.
    Usman N, Beigelman L and McSwiggen JA (1996) Hammerhead ribozyme engineering. Current Opinion in Structural Biology 6: 527–533.
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How to Cite close
Switzer, Christopher(Apr 2001) Nucleotides: Uncommon, Modified and Synthetic. In: eLS. John Wiley & Sons Ltd, Chichester. http://www.els.net [doi: 10.1038/npg.els.0001334]