| References |
|
|
Bright LJ,
Kambesis N and
Nelson SB
(2010)
Comprehensive analysis reveals dynamic and evolutionary plasticity of Rab GTPases and membrane traffic in Tetrahymena thermophila.
PLoS Genetics
6:
e1001155.
|
|
|
Brunk CF,
Lee LC,
Tran AB and
Li J
(2003)
Complete sequence of the mitochondrial genome of Tetrahymena thermophila and comparative methods for identifying highly divergent genes.
Nucleic Acids Research
31:
16731682.
|
|
|
Chalker DL,
Fuller P and
Yao MC
(2005)
Communication between parental and developing genomes during Tetrahymena nuclear differentiation is likely mediated by homologous RNAs.
Genetics
169:
149160.
|
|
|
Cheng CY,
Vogt A,
Mochizuki K and
Yao MC
(2010)
A domesticated piggyBac transposase plays key roles in heterochromatin dynamics and DNA cleavage during programmed DNA deletion in Tetrahymena thermophila.
Molecular Biology of the Cell
21:
17531762.
|
|
|
Chilcoat ND,
Elde NC and
Turkewitz AP
(2001)
An antisense approach to phenotype-based gene cloning in Tetrahymena.
Proceedings of the National Academy of Sciences of the USA
98:
87098713.
|
|
|
Cole ES,
Cassidy-Hanley D,
Hemish J,
Tuan G and
Bruns PJ
(1997)
A mutational analysis of conjugation in Tetrahymena thermophila. I. Phenotypes affecting early development: meiosis to nuclear selection.
Developmental Biology
189:
215232.
|
|
|
Couvillion MT,
Lee SR,
Hogstad B et al.
(2009)
Sequence, biogenesis, and function of diverse small RNA classes bound to the Piwi family proteins of Tetrahymena thermophila.
Genes & Development
23:
20162032.
|
|
|
Coyne RS,
Thiagarajan M,
Jones KM et al.
(2008)
Refined annotation and assembly of the Tetrahymena thermophila genome sequence through EST analysis, comparative genomic hybridization, and targeted gap closure.
BMC Genomics
9:
562.
|
|
|
Doerder FP
(1979)
Regulation of macronuclear DNA content in Tetrahymena thermophila.
Journal of Protozoology
26:
2835.
|
|
|
Eisen JA,
Coyne RS,
Wu M et al.
(2006)
Macronuclear genome sequence of the ciliate Tetrahymena thermophila, a model eukaryote.
PLoS Biology
4(9):
e286.
|
|
|
Frankel J
(2008)
What do genic mutations tell us about the structural patterning of a complex single-celled organism?
Eukaryotic Cell
7:
16171639.
|
|
|
Gu L,
Gaertig J,
Stargell L and
Gorovsky MA
(1995)
Gene-specific signal transduction between microtubules and tubulin genes in Tetrahymena thermophila.
Molecular and Cellular Biology
15:
51735179.
|
|
|
Guo F,
Gooding AR and
Cech TR
(2004)
Structure of the Tetrahymena ribozyme: base triple sandwich and metal ion at the active site.
Molecular Cell
16:
351362.
|
|
|
Haddad A and
Turkewitz AP
(1997)
Analysis of exocytosis mutants indicates close coupling between regulated secretion and transcription activation in Tetrahymena.
Proceedings of the National Academy of Sciences of the USA
94:
1067510680.
|
|
|
Honts JE and
Williams NE
(2003)
Novel cytoskeletal proteins in the cortex of Tetrahymena.
Journal of Eukaryotic Microbiology
50:
914.
|
|
|
Howard-Till RA and
Yao MC
(2006)
Induction of gene silencing by hairpin RNA expression in Tetrahymena thermophila reveals a second small RNA pathway.
Molecular and Cellular Biology
26(23):
87318742. Epub 2006 Sep 25.
|
|
|
book
Karrer K
(2000)
"Tetrahymena genetics: two nuclei are better than one".
In: Asai DJ and
Forney JD (eds)
Tetrahymena thermophila. Methods in Cell Biology, vol.
62,
pp. 127186.
Orlando, FL: Academic Press.
|
|
|
Katz LA,
Snoeyenbos-West O and
Doerder FP
(2006)
Patterns of protein evolution in Tetrahymena thermophila: implications for estimates of effective population size.
Molecular Biology and Evolution
23:
608614.
|
|
|
Miao W,
Xiong J,
Bowen J et al.
(2009)
Microarray analyses of gene expression during the Tetrahymena thermophila life cycle.
PLoS ONE
4:
e4429.
|
|
|
Mochizuki K and
Gorovsky MA
(2004)
Small RNAs in genome rearrangement in Tetrahymena.
Current Opinion in Genetics and Development
14:
181187.
|
|
|
Moradian MM,
Beglaryan D,
Skozylas JM and
Kerikorian V
(2007)
Complete mitochondrial genome sequence of three Tetrahymena species reveals mutation hot spots and accelerated nonsynonymous substitutions in Ymf genes.
PLoS ONE
2:
e650.
|
|
|
book
Nanney DL and
Simon EM
(2000)
"Laboratory and evolutionary history of Tetrahymena thermophila".
In: Asai DJ and
Forney JD (eds)
Tetrahymena thermophila. Methods in Cell Biology, vol.
62,
pp. 325.
Orlando, FL: Academic Press.
|
|
|
Pearson CG and
Winey M
(2009)
Basal body assembly in ciliates: the power of numbers.
Traffic
10:
461471.
|
|
|
Rusconi CP and
Cech TR
(1996)
The anticodon is the signal sequence for mitochondrial import of glutamine tRNA in Tetrahymena.
Genes & Development
10:
28702880.
|
|
|
Smith JC,
Northey JG,
Garg J et al.
(2005)
Robust method for proteome analysis by MS/MS using an entire translated genome: demonstration on the ciliome of Tetrahymena thermophila.
Journal of Proteome Research
4:
909919.
|
|
|
Stemm-Wolf A,
Morgan G,
Giddings TH Jr et al.
(2005)
Basal body duplication and maintenance require one member of the Tetrahymena thermophila centrin gene family.
Molecular Biology of the Cell
16:
36063619.
|
|
|
Stover NA,
Krieger CJ,
Binkley G et al.
(2006)
Tetrahymena Genome Database (TGD): a new genomic resource for Tetrahymena thermophila research.
Nucleic Acids Research
34:
D500503.
|
|
|
Sweeney R,
Fan Q and
Yao MC
(1996)
Antisense ribosomes: rRNA as a vehicle for antisense RNAs.
Proceedings of the National Academy of Sciences of the USA
93:
85188523.
|
|
|
Thazhath R,
Jerka-Dziadosz M,
Duan J et al.
(2004)
Cell context-specific effects of the -tubulin glycylation domain on assembly and size of microtubular organelles.
Molecular Biology of the Cell
15:
41364147.
|
|
|
Turkewitz AP
(2004)
Out with a bang! Tetrahymena as a model system to study secretory granule biogenesis.
Traffic
5:
6368.
|
|
|
Witkin KL and
Collins K
(2004)
Holoenzyme proteins required for the physiological assembly and activity of telomerase.
Genes and Development
18:
11071118.
|
|
|
Xiong J,
Lu X,
Lu Y et al.
(2011a)
Tetrahymena Gene Expression Database (TGED): a resource of microarray data and co-expression analyses for Tetrahymena.
Science China Life Sciences
54:
6567.
|
|
|
Xiong J,
Yuan D,
Fillingham JS et al.
(2011b)
Gene network landscape of the ciliate Tetrahymena thermophila.
PLoS ONE
6:
e20124.
|
|
|
Yao MC and
Chao JL
(2005)
RNA-guided DNA deletion in Tetrahymena: an RNAi-based mechanism for programmed genome rearrangements.
Annual Review of Genetics
39:
537559.
|
|
|
Yao MC,
Fuller P and
Xi X
(2003)
Programmed DNA deletion as an RNA-guided system of genome defence.
Science
300:
15811584.
|
| Further Reading |
|
|
book
Asai DJ and
Forney JD (eds)
(2000)
Tetrahymena thermophila. Methods in Cell Biology, vol.
62.
Orlando, FL: Academic Press.
|
|
|
Blackburn EH
(2005)
Telomeres and telomerase: their mechanisms of action and effects of altering their functions.
FEBS Letters
579:
859862.
|
|
|
Cech TR
(1986)
RNA as an enzyme.
Scientific American
255:
6474.
|
|
|
book
Coombs GH,
Vickerman K,
Sleigh MA and
Warren A (eds)
(1998)
Evolutionary Relationships Among Protozoa.
Dordrecht, NE: Kluwer Academic Publishers.
|
|
|
book
Elliott AM (ed.)
(1973)
Biology of Tetrahymena.
Stroudsburg, PA: Dowden, Hutchinson, and Ross.
|
|
|
book
Frankel J
(1989)
Pattern Formation: Ciliate Studies and Models.
New York: Oxford University Press.
|
|
|
book
Gall JG
(1986)
The Molecular Biology of Ciliated Protozoa.
Orlando, FL: Academic Press.
|
|
|
Greider CW
(1996)
Telomere length regulation.
Annual Review of Biochemistry
65:
337365.
|
|
|
book
Hausmann K and
Bradbury PC (eds)
(1996)
Ciliates: Cells as Organisms.
Stuttgart: Verlag.
|
|
|
book
Nanney DL
(1980)
Experimental Ciliatology: An Introduction to Genetic and Developmental Analysis in Ciliates.
New York: Wiley.
|
|
|
Orias E
(2000)
Toward sequencing the Tetrahymena genome: exploiting the gift of nuclear dimorphism.
Journal of Eukaryotic Microbiology
47:
328333.
|
|
|
Raikov I
(1995)
Structure and genetic organization of the polyploid macronucleus of ciliates: a comparative review.
Acta Protozoologica
34:
151171.
|
|
|
Turkewitz AP,
Orias E and
Kapler G
(2002)
Functional genomics: the coming of age of Tetrahymena thermophila.
Trends in Genetics
18:
3540.
|