Peroxisomes: Methods for Preparation

Peroxisomes are ubiquitous cell organelles that are particularly enriched in mammalian liver and kidney. They contain oxidases producing hydrogen peroxide and catalase, which degrades it. Their main functions are in the metabolism of complex lipids such as bile acids, leucotrienes and prostaglandins. Peroxisomes can be isolated by classical density gradient centrifugation methods and by more recent immunochemical techniques.

Keywords: density gradient centrifugation; immunomagnetic sorting; immune free flow electrophoresis

Figure 1. Flow chart of the procedure used for subfractionating tissue and cell homogenates and isolating highly (>98%) purified peroxisomes. Note that as alternatives to density gradient centrifugation, the stippled fractions also provide the basis for the purification of peroxisomes by immunomagnetic sorting and immune FFE. The values given for the integrated relative centrifugal force (IRCF) imply that the g force in this case is not constant during the centrifugation procedure, due to acceleration and deceleration times. In ultracentrifuges with an advanced design (e.g. Beckman), the IRCF values can be exactly preset on the instrument panel.
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 References
    Baumgart E, Völkl A, Pill J and Fahimi HD (1990) Proliferation without simultaneous induction of the peroxisomal fatty acid -oxidation. FEBS Letters 264: 5–9.
    De Duve C and Baudhuin P (1966) Peroxisomes (microbodies) and related particles. Physiological Reviews 46: 323–357.
    De Duve C, Pressman BC, Gianetto R, Wattiaux R and Appelman F (1955) Tissue fractionation studies. 6. Intracellular distribution patterns of enzymes in liver tissue. Biochemical Journal 60: 604–617.
    Erdmann R, Veenhuis M and Kunau WH (1997) Peroxisomes: organelles at the crossroad. Trends in Cell Biology 7: 400–407.
    book Fahimi HD, Baumgart E, Beier K, et al. (1993) "Ultrastructural and biochemical aspects of peroxisome proliferation and biogenesis in different mammalian species". In: Gibson GG and Lake BG (eds) Peroxisomes: Biology and Importance in Toxicology and Medicine, pp. 395–424. Basingstoke: Taylor & Francis.
    Geuze HJ, Murk JL, Stroobants AK, et al. (2003) Involvement of the endoplasmic reticulum in peroxisome formation. Molecular Biology of the Cell 14: 2900–2907.
    book Gorgas K (1987) "Morphogenesis of peroxisomes in lipid-synthesizing epithelia". In: Fahimi HD and Sies H (eds) Peroxisomes in Biology and Medicine, pp. 3–17. Berlin: Springer-Verlag.
    Hansen E and Hannig K (1982) Antigen-specific electrophoretic cell separation (ASECS): isolation of human T and B lymphocyte subpopulations by free-flow electrophoresis after reaction with antibodies. Journal of Immunological Methods 51: 197–208.
    Howell KE, Schmid R, Ugelstad J and Gruenberg J (1989) Immunoisolation using magnetic solid supports: subcellular fractionation for cell-free functional studies. Methods in Cell Biology 31: 265–292.
    book Lazarow PB and Moser HW (1995) "Disorders of peroxisome biogenesis". In: Scriver CR, Beaudet AL, Sly WS and Valle D (eds) The Metabolic and Molecular Bases of Inherited Disease, vol. II, pp. 2287–2324. New York: McGraw-Hill.
    Lüers G, Hartig R, Mohr H, et al. (1998) Immuno-isolation of highly purified peroxisomes using magnetic beads and continuous immunomagnetic sorting. Electrophoresis 19: 1205–1210.
    Mohr H and Völkl A (2002) Isolation of peroxisomal subpopulations from mouse liver by immune free-flow electrophoresis. Electrophoresis 23: 2130–2137.
    Reddy JK and Mannaerts GP (1994) Peroxisomal lipid metabolism. Annual Review of Nutrition 14: 343–370.
    Subramani S (1993) Protein import into peroxisomes and biogenesis of the organelle. Annual Review of Cell Biology 9: 445–478.
    Titorenko VI, Chan H and Rachubinski RA (2000) Fusion of small vesicles in vitro reconstructs an early step in the in vivo multistep peroxisome assembly pathway of Yarrowia lipolytica. Journal of Cell Biology 148: 29–43.
    Van den Bosch H, Schutgens RBH, Wanders RJA and Tager JM (1992) Biochemistry of peroxisomes. Annual Review of Biochemistry 61: 157–197.
    Völkl A and Fahimi HD (1985) Isolation and characterization of peroxisomes from the liver of normal untreated rats. European Journal of Biochemistry 149: 257–265.
    book Völkl A and Fahimi HD (1998) "Isolation of peroxisomes". In: Celis JE (ed.) Cell Biology: A Laboratory Handbook, vol. 2, pp. 87–92. London: Academic Press.
    Völkl A, Baumgart E and Fahimi HD (1988) Localization of urate oxidase in the crystalline cores of rat liver peroxisomes by immunocytochemistry and immunoblotting. Journal of Histochemistry and Cytochemistry 36: 329–336.
    Völkl A, Mohr H, Weber G and Fahimi HD (1998) Isolation of peroxisome subpopulations from rat liver by means of immune free-flow electrophoresis. Electrophoresis 19: 1140–1144.
    Yamamoto I and Fahimi HD (1987) Three-dimensional reconstruction of a peroxisomal reticulum in regenerating rat liver: evidence of interconnections between heterogeneous segments. Journal of Cell Biology 105: 713–721.
    Zaar K, Völkl A and Fahimi HD (1991) Purification of marginal plates from bovine renal peroxisomes: identification with l-alpha-hydroxyacid oxidase B. Journal of Cell Biology 113: 113–121.
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Völkl, Alfred, and Fahimi, H Dariush(Sep 2005) Peroxisomes: Methods for Preparation. In: eLS. John Wiley & Sons Ltd, Chichester. http://www.els.net [doi: 10.1038/npg.els.0003962]