Protein Stability

Proteins must fold to a globular conformation to carry out the most important tasks in living organisms. The folded, biologically active conformation of a protein is only marginally more stable than unfolded, inactive conformations, thus making proteins more stable is important in medicine and basic research. The major destabilizing force that must be overcome is conformational entropy. The major stabilizing forces are the hydrophobic effect and hydrogen bonding. The ionizable side-chains of amino acid residues may also contribute favourably to protein stability through attractive charge–charge interactions, ion pair formation, or the formation of hydrogen bonds when such groups are buried in the protein interior.

Key Concepts

  • Under physiological conditions, a folded protein is »20 to 60 kJmol–1 more stable than unfolded forms.
  • The major destabilizing force to protein folding is conformational entropy, which contributes »7 kJ mol–1 per residue.
  • The major stabilizing forces are the hydrophobic effect, where the burying of each –CH2– contributes »–5 kJ mol–1, and hydrogen bonding, especially buried intramolecular hydrogen bonds, which may contribute »–7 kJ mol–1 per bond.
  • The ionizable side-chains of amino acid residues may contribute favourably to protein stability through attractive charge–charge interactions, ion pair formation and hydrogen bonding when the ionizable group is buried in the protein interior.

Keywords: protein stability; conformational entropy; hydrophobic effect; hydrogen bonding; protein ionizable groups; -turns

Figure 1. (a) The folding of the globular protein ribonuclease Sa. G for this reaction under physiological conditions is the conformational stability. (b) Rotation around the bonds in a polypeptide chain. Reproduced from Stryer L (1995) Biochemistry, 4th edn. New York: WH Freeman.
Figure 2. (a) Scheme illustrating the formation of an intramolecular hydrogen bond, a hydrophobic bond and an ion pair in the folding of a protein. (b) Contributions to the free energy of folding of ribonuclease Sa at 25°C and pH 7. Ribonuclease Sa contains 96 amino acids. The values for the conformational entropy, hydrophobic effect and hydrogen bonding are based on both theory and experiment. Contributions from ion pair formation are relatively small and not shown in this figure.
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 Further Reading
    Dill KA (1990) Dominant forces in protein folding. Biochemistry 29: 7133–7155.
    book Fersht A (1998) Structure and Mechanism in Protein Science: A Guide to Enzyme Catalysis and Protein Folding. New York: WH Freeman.
    Makhatadze GI and Privalov PL (1995) Energetics of protein structure. Advances in Protein Chemistry 47: 307–425.
    Marcelino AM and Gierasch LM (2008) Roles of beta-turns in protein folding: from peptide models to protein engineering. Biopolymers 89: 380–391.
    Matthews BW (1993) Structural and genetic analysis of protein stability. Annual Review of Biochemistry 62: 139–260.
    Myers JK and Pace CN (1996) Hydrogen bonding stabilizes globular proteins. Biophysical Journal 71: 2033–2039.
    Pace CN, Grimsley GR and Scholtz JM (2009) Protein ionisable groups: pK values and their contribution to protein stability and solubility. Journal of Biological Chemistry 284: 13285–13289.
    Pace CN, Hebert EJ, Shaw KL et al. (1998) Conformational stability and thermodynamics of folding of ribonucleases Sa, Sa2 and Sa3. Journal of Molecular Biology 279: 271–286.
    Pace CN, Trevino S, Prabhakaran E and Scholtz JM (2004) Protein structure, stability and solubility in water and other solvents. Philosophical Transactions of the Royal Society of London, Series B: Biological Sciences 359: 1225–1235.
    book Voet D, Voet JG and Pratt CW (2008) Fundamentals of Biochemistry, 3rd edn. New York: Wiley.
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Pace, C Nick, Grimsley, Gerald R, and Scholtz, J Martin(Dec 2009) Protein Stability. In: eLS. John Wiley & Sons Ltd, Chichester. http://www.els.net [doi: 10.1002/9780470015902.a0003002.pub2]