Time‐resolved X‐ray Crystallography

Time-resolved crystallography is a collection of methods whereby biological reactions proceed in crystals of a macromolecular catalyst, and structures of intermediates formed on the reaction pathway are determined using X-ray crystallography. Such experiments allow investigators to visualize directly the mechanism of enzyme-catalysed reactions or other biological processes.

Keywords: laue diffraction; trapping; enzyme mechanism; photocage; crystallography

Figure 1. Polychromatic Laue X-ray diffraction pattern. The pattern shown is a computational representation of the diffracted X-rays produced from a crystal of isocitrate dehydrogenase using an incident X-ray beam bandpass of 0.95–1.55 Å and a maximum resolution for observed spots of 2.4 Å. For this crystal, which belongs to space group P43212, a = b = 105.1 Å, c = 150 Å, more than 50% of the unique diffracted X-rays are collected from a single exposure. Typical exposure time to collect a diffraction pattern is 1 ms.
Figure 2. General methods of intermediate accumulation for time-resolved crystallographic studies. (a) A rapid initiation event, usually a photoreaction, induces the formation of a substrate complex ‘A’ with a rate constant of kstart. The reaction proceeds and encounters a rate-limited intermediate ‘I’ which decays with a rate constant kcat. The lifetime of the intermediate during this initial reaction event is dictated by kcat. The occupancy or concentration of I throughout the crystal during this time period is dictated by the initial concentration of A produced by the photoreaction, and by the ratio of kstart to kcat. (b) A high occupancy, rate-limited, steady-state complex accumulates throughout the crystal as a result of diffusion of substrate into the crystal solvent channels. The occupancy or concentration of the rate-limited intermediate I is a function of the rate of diffusion relative to kcat, as is the time required to achieve steady state. In principle, the intermediate I can be maintained indefinitely; in practice, the crystal will often display a limited period of stability under multi-turnover conditions.
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 References
    Berriman J and Unwin N (1994) Analysis of transient structures by cryomicroscopy combined with rapid mixing of spray droplets. Ultramicroscopy 56: 241–252.
    Farber GK (1998) Sensing photons. Nature Structural Biology 5(6): 415–417.
    book Moffat K (1997) "Laue diffraction". In: Carter C and Sweet RM (eds) Methods in Enzymology, pp. 433–447. San Diego: Academic Press.
    Moffat K and Henderson R (1995) Freeze trapping of reaction intermediates. Current Opinion in Structural Biology 5: 656–663.
    book Schlichting I and Goody RS (1997) "Triggering methods in crystallographic enzyme kinetics". In: Carter C and Sweet RM (eds) Methods in Enzymology, pp. 467–490. San Diego: Academic Press.
    Subramaniam S, Gerstein M, Oesterhelt D and Henderson R (1993) Electron diffraction analysis of structural changes in the photocycle of bacteriorhodopsin. EMBO Journal 12: 1–8.
 Further Reading
    Altarelli M, Schlachter F and Cross J (1998) Making ultrabright X-rays. Scientific American 279(6): 66–73.
    book Cruickshank DWJ, Helliwell JR and Johnson LN (eds) (1992) Time-resolved Macromolecular Crystallography. New York: Oxford University Press.
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Stoddard, Barry L(Mar 2002) Time‐resolved X‐ray Crystallography. In: eLS. John Wiley & Sons Ltd, Chichester. http://www.els.net [doi: 10.1038/npg.els.0003046]