References
Allendorf FW (2016) Genetics and the conservation of natural populations: allozymes to genomes. Molecular Ecology 38: 42–49.
Andrews KR, Good JM, Miller MR, et al. (2016) Harnessing the power of RADseq for ecological and evolutionary genomics. Nature Reviews. Genetics 17: 81–92.
Araújo‐Silva LE, Miranda LS, Carneiro L and Aleixo A (2017) Phylogeography and diversification of an Amazonian understory hummingbird: paraphyly and evidence for widespread cryptic speciation in the Plio‐Pleistocene. Ibis 159: 778–791.
Arct A, Drobniak SM and Cichoń M (2015) Genetic similarity between mates predicts extrapair paternity—a meta‐analysis of bird studies. Behavioral Ecology 26: 959–968.
Baird NA, Etter PD, Atwood TS, et al. (2008) Rapid SNP discovery and genetic mapping using sequenced RAD markers. PLoS One 3: e3376.
Beheregaray LB (2008) Twenty years of phylogeography: the state of the field and the challenges for the Southern Hemisphere. Molecular Ecology 17: 3754–3774.
Bi K, Linderoth T, Vanderpool D, et al. (2013) Unlocking the vault: next‐generation museum population genomics. Molecular Ecology 22: 6018–6032.
Biagolini C, Westneat DF and Francisco MR (2017) Does habitat structural complexity influence the frequency of extra‐pair paternity in birds? Behavioral Ecology and Sociobiology 71: 101.
Bleidorn C (2016) Third generation sequencing: technology and its potential impact on evolutionary biodiversity research. Systematics and Biodiversity 14: 1–8.
Caye K, Deist TM, Martins H, et al. (2016) TESS3: fast inference of spatial population structure and genome scans for selection. Molecular Ecology Resources 16: 540–548.
CBOL Plant Working Group, Hollingsworth PM, Forrest LL, et al. (2009) A DNA barcode for land plants. Proceedings of the National Academy of Sciences of the United States of America 106: 12794–12797.
Ciotir C and Freeland J (2016) Cryptic intercontinental dispersal, commercial retailers, and the genetic diversity of native and non‐native cattails (Typha spp.) in North America. Hydriobiologia 768: 137–150.
Corander J, Marttinen P, Sirén J and Tang J (2008) Enhanced Bayesian modelling in BAPS software for learning genetic structures of populations. BMC Bioinformatics 9: 539.
Creer S, Deiner K, Frey S, et al. (2016) The ecologist's field guide to sequence‐based identification of biodiversity. Methods in Ecology and Evolution 7: 1008–1018.
Cristescu ME (2015) Genetic reconstructions of invasion history. Molecular Ecology 24: 2212–2225.
Deiner K, Bik HM, Mächler E, et al. (2017) Environmental DNA metabarcoding: transforming how we survey animal and plant communities. Molecular Ecology 26: 5872–5895.
Elderkin CL, Clewing C, Ndeo OW and Albrecht C (2016) Molecular phylogeny and DNA barcoding confirm cryptic species in the African freshwater oyster Etheria elliptica Lamarck, 1807 (Bivalvia: Etheriidae). Biological Journal of the Linnean Society 118: 369–381.
Ellegren H (2004) Microsatellites: simple sequences with complex evolution. Nature Reviews. Genetics 5: 435–445.
Falush D, Stephens M and Pritchard JK (2003) Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies. Genetics 164: 1567–1587.
Fourment M, Darling AE and Holmes EC (2017) The impact of migratory flyways on the spread of avian influenza virus in North America. BMC Evolutionary Biology 17: 118.
Frankham R (2010) Inbreeding in the wild really does matter. Heredity 104: 124.
Frankham R (2015) Genetic rescue of small inbred populations: meta‐analysis reveals large and consistent benefits of gene flow. Molecular Ecology 24: 2610–2618.
Fuentes‐Pardo AP and Ruzzante DE (2017) Whole‐genome sequencing approaches for conservation biology: advantages, limitations and practical recommendations. Molecular Ecology. http://doi.org/10.1111/mec.14264.
Graw B, Lindholm AK and Manser MB (2016) Female‐biased dispersal in the solitarily foraging slender mongoose, Galerella sanguinea, in the Kalahari. Animal Behaviour 111: 69–78.
Guillot G, Renaud S, Ledevin R, et al. (2012) A unifying model for the analysis of phenotypic, genetic, and geographic data. Systematic Biology 61: 897–911.
Hall LA and Beissinger SR (2014) A practical toolbox for design and analysis of landscape genetics studies. Landscape Ecology 29 (9): 1487–1504. http://doi.org/10.1007/s10980‐014‐0082‐3.
Heather JM and Chain B (2016) The sequence of sequencers: the history of sequencing DNA. Genomics 107 (1): 1–8. http://doi.org/10.1016/j.ygeno.2015.11.003.
Hebert PDN, Penton EH, Burns JM, et al. (2004) Ten species in one: DNA barcoding reveals cryptic species in the neotropical skipper butterfly Astraptes fulgerator. Proceedings of the National Academy of Sciences of the United States of America 101: 14812–14817.
Herrera S and Shank TM (2016) RAD sequencing enables unprecedented phylogenetic resolution and objective species delimitation in recalcitrant divergent taxa. Molecular Phylogenetics and Evolution 100: 70–79. http://doi.org/10.1016/j.ympev.2016.03.010.
Hodel RGJ, Segovia‐Salcedo MC, Landis JB, et al. (2016) The report of my death was an exaggeration: a review for researchers using microsatellites in the 21st Century. Applications in Plant Sciences 4: 1600025.
Holderegger R and Wagner HH (2008) Landscape genetics. BioScience 58: 199.
Hubisz MJ, Falush D, Stephens M and Pritchard JK (2009) Inferring weak population structure with the assistance of sample group information. Molecular Ecology Resources 9: 1322–1332.
Jacquot M, Nomikou K, Palmarini M, et al. (2017) Bluetongue virus spread in Europe is a consequence of climatic, landscape and vertebrate host factors as revealed by phylogeographic inference. Proceedings. Biological Sciences 284: 20170919.
Jamieson IG and Allendorf FW (2012) How does the 50/500 rule apply to MVPs? Trends in Ecology & Evolution 27: 578–584.
Jeffries DL, Copp GH, Lawson Handley L, et al. (2016) Comparing RADseq and microsatellites to infer complex phylogeographic patterns, an empirical perspective in the Crucian carp, Carassius, L. Molecular Ecology 25: 2997–3018.
Klippel AH, Oliveira PV, Britto KB, et al. (2015) Using DNA barcodes to identify road‐killed animals in two Atlantic Forest Nature Reserves, Brazil. PLoS One 10 (8): e0134877.
Lallias D, Hiddink JG, Fonseca VG, et al. (2015) Environmental metabarcoding reveals heterogeneous drivers of microbial eukaryote diversity in contrasting estuarine ecosystems. The ISME Journal 9: 1208–1221.
Lepais O, Darvill B, O'Connor S, et al. (2010) Estimation of bumblebee queen dispersal distances using sibship reconstruction method. Molecular Ecology 19: 819–831.
Li X, Yang Y, Henry RJ, et al. (2015) Plant DNA barcoding: from gene to genome. Biological Reviews 90: 157–166.
López‐Uribe MM, Zamudio KR, Cardoso CF and Danforth BN (2014) Climate, physiological tolerance, and sex‐biased dispersal shape genetic structure of Neotropical orchid bees. Molecular Ecology 23: 1874–1890.
Manel S and Holderegger R (2013) Ten years of landscape genetics. Trends in Ecology & Evolution 28: 614–621.
Manel S, Schwartz MK, Luikart G and Taberlet P (2003) Landscape genetics: combining landscape ecology and population genetics. Trends in Ecology & Evolution 18: 89–197.
McRae BH and Beier P (2007) Circuit theory predicts gene flow in plant and animal populations. Proceedings of the National Academy of Sciences of the United States of America 104: 19885–19890.
Momigliano P, Harcourt R, Robbins WD, et al. (2017) Genetic structure and signatures of selection in grey reef sharks (Carcharhinus amblyrhynchos). Heredity 119: 142–153.
Nieto Feliner G (2014) Patterns and processes in plant phylogeography in the Mediterranean Basin. A review. Perspectives in Plant Ecology, Evolution and Systematics 16: 265–278.
Pritchard JK, Stephens M and Donnelly P (2000) Inference of population structure using multilocus genotype data. Genetics 155: 945–959.
Reuter JA, Spacek DV and Snyder MP (2015) High‐throughput sequencing technologies. Molecular Cell 58: 586–597.
Richmond JQ, Wood DA, Westphal MF, et al. (2017) Persistence of historical population structure in an endangered species despite near‐complete biome conversion in California's San Joaquin Desert. Molecular Ecology 26: 3618–3635.
Rissler LJ (2016) Union of phylogeography and landscape genetics. Proceedings of the National Academy of Sciences 113: 8079–8086.
Schunter C, Pascual M, Garza JC, et al. (2014) Kinship analyses identify fish dispersal events on a temperate coastline. Proceedings of the Royal Society B: Biological Sciences 281: 20140556.
Selkoe KA, D'Aloia CC, Crandall ED, et al. (2016) A decade of seascape genetics: contributions to basic and applied marine connectivity. Marine Ecology Progress Series 554: 1–19.
Sexton JP, Hangartner SB and Hoffmann AA (2014) Genetic isolation by environment or distance: which pattern of gene flow is most common? Evolution 68: 1–15.
Städele V and Vigilant L (2016) Strategies for determining kinship in wild populations using genetic data. Ecology and Evolution 6: 6107–6120.
Taberlet P, Coissac E, Hajibabaei M and Rieseberg LH (2012) Environmental DNA. Molecular Ecology 21: 1789–1793.
Tanzler R, Sagata K, Surbakti S, Balke M and Riedel A (2012) DNA barcoding for community ecology: how to tackle a hyperdiverse, mostly undescribed Melanesian fauna. PLoS One 7: e28832.
Wang IJ (2010) Recognizing the temporal distinctions between landscape genetics and phylogeography. Molecular Ecology 19: 2605–2608.
Wang IJ and Bradburd GS (2014) Isolation by environment. Molecular Ecology 23: 5649–5662.
Wright S (1943) Isolation by distance. Genetics 28: 114–138.
Wright S (1951) The genetical structure of populations. Annals of Eugenics 15: 323–354.
Further Readings
Allendorf FW (2017) Genetics and the conservation of natural populations: allozymes to genomes. Molecular Ecology 26 (2): 420–430.
Andrews R, Good KR, Millar MR, et al. (2016) Harnessing the power of RADseq for ecological and evolutionary genomics. Nature Reviews. Genetics 17: 81–92.
Charlesworth B and Charlesworth D (2017) Population genetics from 1966 to 2016. Heredity 118: 2–9.
Cristescu ME (2014) From barcoding single individuals to metabarcoding biological communities: towards an integrative approach to the study of global biodiversity. Trends in Ecology & Evolution 29: 566–571.
Creer S, Deiner K, Freer S, et al. (2016) The ecologist's field guide to sequence‐based identification of biodiversity. Methods in Ecology and Evolution 7: 1008–1018.
Deiner K, Bik HM, Mächler E, et al. (2017) Environmental DNA metabarcoding: transforming how we survey animal and plant communities. Molecular Ecology 26: 5872–5895.
Epps CW and Keyghobadi N (2015) Landscape genetics in a changing world: disentangling historical and contemporary influences and inferring change. Molecular Ecology 24: 6021–6040.
Freeland JR, Kirk H and Petersen S (2011) Molecular Ecology, 2nd edn. Chichester: John Wiley & Sons, Ltd.
Hall LA and Beissinger SR (2014) A practical toolbox for design and analysis of landscape genetics studies. Landscape Ecology 29: 1487–1504.
Heather JM and Chain B (2016) The sequence of sequencers: the history of sequencing DNA. Genomics 107: 1–8.
Hodel RGJ, Segovia‐Salcedo MC, Landis JB, et al. (2016) The report of my death was an exaggeration: a review for researchers using microsatellites in the 21st century. Application in Plant Sciences 4: 1600025.
Kaiser SA, Taylor SA, Chen N, et al. (2017) A comparative assessment of SNP and microsatellite markers for assigning parentage in a socially monogamous bird. Molecular Ecology Resources 17: 183–193.
Kress WJ, García‐Robledo C, Uriarte M, et al. (2015) DNA barcodes for ecology, evolution, and conservation. Trends in Ecology & Evolution 30: 25–35.
Rellstab C, Gugerli F, Eckert AJ, et al. (2015) A practical guide to environmental association analysis in landscape genomics. Molecular Ecology 24: 4348–4370.