| References |
|
|
Albiez H,
Cremer M,
Tiberi C et al.
(2006)
Chromatin domains and the interchromatin compartment form structurally defined and functionally interacting nuclear networks.
Chromosome Research
14(7):
707–733.
|
|
|
Barski A,
Cuddapah S,
Cui K et al.
(2007)
High-resolution profiling of histone methylations in the human genome.
Cell
129(4):
823–837.
|
|
|
Bernstein BE,
Mikkelsen TS,
Xie X et al.
(2006)
A bivalent chromatin structure marks key developmental genes in embryonic stem cells.
Cell
125(2):
315–326.
|
|
|
Bird A
(2002)
DNA methylation patterns and epigenetic memory.
Genes Development
16(1):
6–21. (Review).
|
|
|
Boyle S,
Gilchrist S,
Bridger JM et al.
(2001)
The spatial organization of human chromosomes within the nuclei of normal and emerin-mutant cells.
Human Molecular Genetics
10(3):
211–219.
|
|
|
Branco MR and
Pombo A
(2006)
Intermingling of chromosome territories in interphase suggests role in translocations and transcription-dependent associations.
PLoS Biology
4(5):
e138.
|
|
|
Brownell JE,
Zhou J,
Ranalli T et al.
(1996)
Tetrahymena histone acetyltransferase A: a homolog to yeast Gcn5p linking histone acetylation to gene activation.
Cell
84(6):
843–851.
|
|
|
Cao R,
Wang L,
Wang H et al.
(2002)
Role of histone H3 lysine 27 methylation in Polycomb-group silencing.
Science
298(5595):
1039–1043.
|
|
|
Cavalli G
(2007)
Chromosome kissing.
Current Opinion in Genetics and Development
17(5):
443–450. (Review).
|
|
|
Chambeyron S and
Bickmore WA
(2004)
Chromatin decondensation and nuclear reorganization of the HoxB locus upon induction of transcription.
Genes Development
18(10):
1119–1130.
|
|
|
Chang B,
Chen Y,
Zhao Y and
Bruick RK
(2007)
JMJD6 is a histone arginine demethylase.
Science
318(5849):
444–447.
|
|
|
Cremer T,
Cremer C,
Schneider T et al.
(1982)
Analysis of chromosome positions in the interphase nucleus of Chinese hamster cells by laser-UV-microirradiation experiments.
Human Genetics
62(3):
201–209.
|
|
|
Croft JA,
Bridger JM,
Boyle S et al.
(1999)
Differences in the localization and morphology of chromosomes in the human nucleus.
Journal of Cell Biology
145(6):
1119–1131.
|
|
|
de Napoles M,
Mermoud JE,
Wakao R et al.
(2004)
Polycomb group proteins Ring1A/B link ubiquitylation of histone H2A to heritable gene silencing and X inactivation.
Developmental Cell
7(5):
663–676.
|
|
|
Ferrai C,
Xie SQ,
Luraghi P et al.
(2010)
Poised transcription factories prime silent uPA gene prior to activation.
PLoS Biology
8(1):
e1000270.
|
|
|
Filion GJ,
van Bemmel JG,
Braunschweig U et al.
(2010)
Systematic protein location mapping reveals five principal chromatin types in Drosophila cells.
Cell
143(2):
212–224.
|
|
|
Gilbert N,
Boyle S,
Fiegler H et al.
(2004)
Chromatin architecture of the human genome: gene-rich domains are enriched in open chromatin fibers.
Cell
118(5):
555–566.
|
|
|
Hassan AH,
Neely KE and
Workman JL
(2001)
Histone acetyltransferase complexes stabilize swi/snf binding to promoter nucleosomes.
Cell
104(6):
817–827.
|
|
|
Hsu JY,
Sun ZW,
Li X et al.
(2000)
Mitotic phosphorylation of histone H3 is governed by Ipl1/aurora kinase and Glc7/PP1 phosphatase in budding yeast and nematodes.
Cell
102(3):
279–291.
|
|
|
Huang S,
Litt M and
Felsenfeld G
(2005)
Methylation of histone H4 by arginine methyltransferase PRMT1 is essential in vivo for many subsequent histone modifications.
Genes Development
19(16):
1885–1893.
|
|
|
Imhof A and
Wolffe AP
(1998)
Transcription: gene control by targeted histone acetylation.
Current Biology
8(12):
R422–R424. (Review).
|
|
|
Jenuwein T and
Allis CD
(2001)
Translating the histone code.
Science
293(5532):
1074–1080. (Review).
|
|
|
Khorasanizadeh S
(2004)
The nucleosome: from genomic organization to genomic regulation.
Cell
116(2):
259–272. (Review).
|
|
|
Kurz A,
Lampel S,
Nickolenko JE et al.
(1996)
Active and inactive genes localize preferentially in the periphery of chromosome territories.
Journal of Cell Biology
135(5):
1195–1205.
|
|
|
Labrador M and
Corces VG
(2003)
Phosphorylation of histone H3 during transcriptional activation depends on promoter structure.
Genes Development
17(1):
43–58.
|
|
|
Lachner M,
O'Carroll D,
Rea S,
Mechtler K and
Jenuwein T
(2001)
Methylation of histone H3 lysine 9 creates a binding site for HP1 proteins.
Nature
410(6824):
116–120.
|
|
|
Le Guezennec X,
Vermeulen M,
Brinkman AB et al.
(2006)
MBD2/NuRD and MBD3/NuRD, two distinct complexes with different biochemical and functional properties.
Molecular and Cellular Biology
26(3):
843–851.
|
|
|
Litt M,
Qiu Y and
Huang S
(2009)
Histone arginine methylations: their roles in chromatin dynamics and transcriptional regulation.
Bioscience Reports
29(2):
131–141.
|
|
|
Manuelidis L
(1985)
Individual interphase chromosome domains revealed by in situ hybridization.
Human Genetics
71(4):
288–293.
|
|
|
Marks PA and
Xu WS
(2009)
Histone deacetylase inhibitors: potential in cancer therapy.
Journal of Cellular Biochemistry
107(4):
600–608. (Review).
|
|
|
Marshall WF,
Fung JC and
Sedat JW
(1997)
Deconstructing the nucleus: global architecture from local interactions.
Current Opinion in Genetics and Development
7(2):
259–263. (Review).
|
|
|
Misteli T
(2005)
Concepts in nuclear architecture.
Bioessays
27(5):
477–487. (Review).
|
|
|
Mizzen CA,
Yang XJ,
Kokubo T et al.
(1996)
The TAF(II)250 subunit of TFIID has histone acetyltransferase activity.
Cell
87(7):
1261–1270.
|
|
|
Morey C,
Da Silva NR,
Perry P,
Bickmore WA
(2007)
Nuclear reorganisation and chromatin decondensation are conserved, but distinct, mechanisms linked to Hox gene activation.
Development
134(5):
909–919.
|
|
|
Parada LA,
McQueen PG,
Munson PJ,
Misteli T
(2002)
Conservation of relative chromosome positioning in normal and cancer cells.
Current Biology
12(19):
1692–1697.
|
|
|
Parada LA,
McQueen PG and
Misteli T
(2004)
Tissue-specific spatial organization of genomes.
Genome Biology
5(7):
R44.
|
|
|
Peterson CL and
Laniel MA
(2004)
Histones and histone modifications.
Current Biology
14(14):
R546–R551.
|
|
|
Sanders SL,
Portoso M,
Mata J et al.
(2004)
Methylation of histone H4 lysine 20 controls recruitment of Crb2 to sites of DNA damage.
Cell
119(5):
603–614.
|
|
|
Shi Y,
Lan F,
Matson C et al.
(2004)
Histone demethylation mediated by the nuclear amine oxidase homolog LSD1.
Cell
119(7):
941–953.
|
|
|
Shi Y and
Whetstine JR
(2007)
Dynamic regulation of histone lysine methylation by demethylases.
Molecular Cell
25(1):
1–14. (Review).
|
|
|
Sims RJ,
Nishioka K,
Reinberg D
(2003)
Histone lysine methylation: a signature for chromatin function.
Trends in Genetics
19(11):
629–639.
|
|
|
Tardat M,
Brustel J,
Kirsh O et al.
(2010)
The histone H4 Lys 20 methyltransferase PR-Set7 regulates replication origins in mammalian cells.
Nature Cell Biology
12(11):
1086–1093.
|
|
|
Van Steensel B and
Dekker J
(2010)
Genomics tools for unraveling chromosome architecture.
Nature Biotechnology
28(10):
1089–1095.
|
|
|
Vitaliano-Prunier A,
Menant A,
Hobeika M et al.
(2008)
Ubiquitylation of the COMPASS component Swd2 links H2B ubiquitylation to H3K4 trimethylation.
Nature Cell Biology
10(11):
1365–1371.
|
|
|
Wang Y,
Wysocka J,
Sayegh J et al.
(2004)
Human PAD4 regulates histone arginine methylation levels via demethylimination.
Science
306(5694):
279–283.
|
|
|
Wolffe AP
(1996)
Histone deacetylase: a regulator of transcription.
Science
272(5260):
371–372. (Review).
|
|
|
Wu J,
Huen MS,
Lu LY et al.
(2009)
Histone ubiquitination associates with BRCA1-dependent DNA damage response.
Molecular and Cellular Biology
29(3):
849–860.
|
|
|
Zhang Y
(2003)
Transcriptional regulation by histone ubiquitination and deubiquitination.
Genes Development
17(22):
2733–2740. (Review).
|
| Further Reading |
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other
Bryan M Turner
(2007)
Chromatin and Gene Regulation: Mechanisms in epigenetics,
DOI: 10.1002/9780470750629.
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book
David Allis,
Thomas Jenuwein and
Danny Reinberg
(2007)
Epigenetics.
Cold Spring Harbor Laboratory Press.
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book
Elgin SCR and
Workman JL
(2000)
Chromatin Structure and Gene Expression,
2nd edn.
Oxford, UK: Oxford University Press.
|
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book
Wolffe A
(1998)
Chromatin: Structure and Function,
3rd edn.
London, UK: Academic Press.
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