Expression Analysis In Vitro

Expression analysis in vitro is a rapidly growing and constantly evolving field, based upon the use of a template of RNA, for a translation reaction, or of DNA, in a coupled transcription–translation system.

Keywords: reporter gene studies; DNase footprinting; methylation interference assays; gel-shift assay; yeast one-; two- and three-hybrid system; phage display

Figure 1. Schematic overview of yeast one-, two- and three-hybrid systems. DNA-BP and -AD are, respectively, the DNA-binding domain and the activation domain, identified in many eukaryotic transcriptional activators as functionally and physically independent units. (a) In one-hybrid systems, the two domains must be present in the same chimeric protein to allow generation of the transcriptional signal by the reporter gene, generally consisting in growth or color selection; (b) in two-hybrid systems, they are coupled to proteins P1 and P2, whose physical interaction is a necessary prerequisite for a successful transcription of the reporter gene; (c) in three-hybrid systems, a third hybrid molecule acts to bring together the DNA-BP fused to the receptor for one ligand with the DNA-AD fused to the receptor for the second ligand, thus reconstituting a functional transcriptional activator.
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 References
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 Further Reading
    Allen JB, Walberg MV, Edwards MC and Elledge SJ (1995) Finding prospective partners in the library: the two-hybrid system and phage display find a match. Trends in Biochemistry 20: 511–516.
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    Griffith EC, Licitra EJ and Liu JO (2000) Yeast three-hybrid systems for detecting ligand-receptor interactions. Methods in Enzymology 328: 89–102.
    Gstaiger M, Knoepfel L, Georgiev O, Schaffner W and Hovens CM (1995) A B-cell coactivator of octamer-binding transcription factors. Nature 373: 360–362.
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    Sachdev SS, Lowman HB, Cunningham BC and Wells JA (2000) Phage display for selection of novel binding peptides. Methods in Enzymology 328: 333–363.
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Colosimo, Alfredo(Jan 2006) Expression Analysis In Vitro. In: eLS. John Wiley & Sons Ltd, Chichester. http://www.els.net [doi: 10.1038/npg.els.0005678]