Mass Spectrometry in Protein Characterization

The complete complement of proteins in a cell, the proteome, is highly complex because a single protein can exist in several different forms. Mass spectrometry has emerged as the tool of choice for protein identification as well as for characterization of posttranslational modifications.

Keywords: mass spectrometry; ionization; posttranslational; modifications; phosphorylation; quantification; MALDI

 References
    Bennett KL, Matthiesen T and Roepstorff P (2000) Probing protein surface topology by chemical surface labeling, crosslinking, and mass spectrometry. Methods in Molecular Biology 146: 113–132.
    Goshe MB, Conrads TP, Panisko EA, et al. (2001) Phosphoprotein isotope-coded affinity tag approach for isolating and quantitating phosphopeptides in proteome-wide analyses. Analytical Chemistry 73: 2578–2586.
    Gygi SP, Rist B, Gerber SA, et al. (1999) Quantitative analysis of complex protein mixtures using isotope-coded affinity tags. Nature Biotechnology 17: 994–999.
    Hernandez H and Robinson CV (2001) Dynamic protein complexes: insights from mass spectrometry. Journal of Biological Chemistry 276: 46685–46 688.
    Horn DM, Zubarev RA and McLafferty FW (2000) Automated de novo sequencing of proteins by tandem high-resolution mass spectrometry. Proceedings of the National Academy of Sciences of the United States of America 97: 10313–10317.
    Laiko VV, Moyer SC and Cotter RJ (2000) Atmospheric pressure MALDI/ion trap mass spectrometry. Analytical Chemistry 72: 5239–5243.
    Loboda AV, Krutchinsky AN, Bromirski M, Ens W and Standing KG (2000) A tandem quadrupole/time-of-flight mass spectrometer with a matrix-assisted laser desorption/ionization source: design and performance. Rapid Communications in Mass Spectrometry 14: 1047–1057.
    Oda Y, Huang K, Cross FR, Cowburn D and Chait BT (1999) Accurate quantitation of protein expression and site-specific phosphorylation. Proceedings of the National Academy of Sciences of the United States of America 96: 6591–6596.
    Oda Y, Nagasu T and Chait BT (2001) Enrichment analysis of phosphorylated proteins as a tool for probing the phosphoproteome. Nature Biotechnology 19: 379–382.
    Shevchenko A, Wilm M and Mann M (1997) Peptide sequencing by mass spectrometry for homology searches and cloning of genes. Journal of Protein Chemistry 16: 481–490.
    Vestal ML (2001) Methods of ion generation. Chemical Reviews 101: 361–375.
    Washburn MP, Wolters D and Yates JR III (2001) Large-scale analysis of the yeast proteome by multidimensional protein identification technology. Nature Biotechnology 19: 242–247.
    Weckwerth W, Willmitzer L and Fiehn O (2000) Comparative quantification and identification of phosphoproteins using stable isotope labeling and liquid chromatography/mass spectrometry. Rapid Communications in Mass Spectrometry 14: 1677–1681.
    Wilm M and Mann M (1996) Analytical properties of the nanoelectrospray ion source. Analytical Chemistry 68: 1–8.
    Yamashita M and Fenn JB (1984) Electrospray ion source. Another variation on the free-jet theme. Journal of Physical Chemistry 88: 4451–4459.
    Zhou H, Watts JD and Aebersold R (2001) A systematic approach to the analysis of protein phosphorylation. Nature Biotechnology 19: 375–378.
 Further Reading
    Aebersold R and Goodlett DR (2001) Mass spectrometry in proteomics. Chemical Reviews 101: 269–296.
    book Burlingame AL, Carr SA and Baldwin MA (eds.) (2000) Mass Spectrometry in Biology and Medicine. Totowa, NJ: Humana Press.
    book Chapman JR (ed.) (2000) Mass Spectrometry of Proteins and Peptides. Totowa, NJ: Humana Press.
    Larsen MR and Roepstorff P (2000) Mass spectrometric identification of proteins and characterization of their post-translational modifications in proteome analysis. Fresenius Journal of Analytical Chemistry 366: 677–690.
    Mann M, Hendrickson RC and Pandey A (2001) Analysis of proteins and proteomes by mass spectrometry. Annual Reviews of Biochemistry 70: 437–473.
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Steen, Hanno, and Pandey, Akhilesh(Jan 2006) Mass Spectrometry in Protein Characterization. In: eLS. John Wiley & Sons Ltd, Chichester. http://www.els.net [doi: 10.1038/npg.els.0005726]