| References |
|
|
Aparicio S,
Morrison A,
Gould A et al.
(1995)
Detecting conserved regulatory elements with the model genome of the Japanese pufferfish, Fugu rubipes.
Proceedings of the National Academy of Sciences of the USA
92: 16841688.
|
|
|
Averof M and
Patel NH
(1997)
Crustacean appendage evolution associated with changes in Hox gene expression.
Nature
388: 682686.
|
|
|
Bamshad MJ,
Mummidi S,
Gonzles E et al.
(2002)
A strong signature of balancing selection in the 5¢ cis-regulatory region of CCR5.
Proceedings of the National Academy of Sciences of the USA
99: 1053910544.
|
|
|
Buckwold VE,
Xu ZC,
Yen TSB and
Ou JH
(1997)
Effects of a frequent double-nucleotide basal core promoter mutation and its putative single-nucleotide precursor mutations on hepatitis B virus gene expression and replication.
Journal of General Virology
78: 20552065.
|
|
|
Burke AC,
Nelson CE,
Morgan BA and
Tabin C
(1995)
Hox genes and the evolution of vertebrate axial morphology.
Development
121: 333346.
|
|
|
book
Carroll SB,
Grenier JK and
Weatherbee SD
(2001)
From DNA to Diversity: Molecular Genetics and the Evolution of Animal Design.
Malden:
Blackwell Science.
|
|
|
book
Cooper DN
(1999)
Human Gene Evolution.
Oxford, UK:
BIOS Scientific Publishers.
|
|
|
book
Davidson EH
(2001)
Genomic Regulatory Systems: Development and Evolution.
San Diego, CA:
Academic Press.
|
|
|
Dermitzakis ET and
Clark AG
(2002)
Evolution of transcription factor binding sites in mammalian gene regulatory regions: conservation and turnover.
Molecular Biology and Evolution
19: 11141121.
|
|
|
Hamblin MT and
Di Rienzo A
(2000)
Detection of the signature of natural selection in humans: evidence from the Duffy blood group locus.
American Journal of Human Genetics
66: 16691679.
|
|
|
Kopp A,
Duncan I,
Godt D and
Carroll SB
(2001)
Genetic control and evolution of sexually dimorphic characters.
Nature
408: 553559.
|
|
|
Lowe CJ and
Wray GA
(1997)
Radical alterations in the roles of homeobox genes during echinoderm evolution.
Nature
389: 718721.
|
|
|
Ludwig M and
Kreitman M
(1995)
Evolutionary dynamics of the enhancer region of even-skipped in Drosophila.
Molecular Biology and Evolution
12: 10021011.
|
|
|
book
Raff RA and
Kauffman TC
(1983)
Embryos, Genes, and Evolution.
Bloomington, IN:
Indiana University Press.
|
|
|
Rinder H,
Thomschke A,
Rusch-Gerdes S et al.
(1998)
Significance of ahpC promoter mutations for the prediction of isoniazid resistance in Mycobacterium tuberculosis.
European Journal of Clinical Microbiology and Infectious Diseases
17: 508511.
|
|
|
Rockman MV and
Wray GA
(2002)
Abundant raw material for cis-regulatory evolution in humans.
Molecular Biology and Evolution
19: 19912004.
|
|
|
Segal JA,
Lynn Barnett J and
Crawford DL
(1999)
Functional analysis of natural variation in Sp1 binding sites of a TATA-less promoter.
Journal of Molecular Evolution
49: 736749.
|
|
|
Shabalina SA,
Ogurtsov AY,
Kondrashov VA and
Kondrashov AS
(2001)
Selective constraint in intergenic regions of human and mouse genomes.
Trends in Genetics
17: 373376.
|
|
|
Shaw PJ,
Wratten NS,
McGregor AP and
Dover GA
(2002)
Coevolution in bicoid-dependent promoters and the inception of regulatory incompatibilities among species of higher Diptera.
Evolution and Development
4: 265277.
|
|
|
Tournamille C,
Colin Y,
Cartron JP and
Le Van Kim C
(1995)
Disruption of a GATA motif in the Duffy gene promoter abolishes erythroid gene expression in Duffy-negative individuals.
Nature Genetics
10: 224228.
|
|
|
Tümpel S,
Maconochie M,
Wiedeman LM and
Krumlauf R
(2002)
Conservation and diversity in the cis-regulatory networks that integrate information controlling expression of Hoxa2 in hindbrain and cranial neural crest cells in vertebrates.
Developmental Biology
246: 4556.
|
|
|
Wang RL,
Stec A,
Hey J,
Lukens L and
Doebley J
(1999)
The limits of selection during maize domestication.
Nature
398: 236239.
|
|
|
book
White RJ
(2001)
Gene Transcription: Mechanisms and Control.
Oxford, UK:
Blackwell Science.
|
|
|
book
Wilkins AS
(2002)
The Evolution of Developmental Pathways.
Sunderland, MA:
Sinauer Associates.
|
|
|
Wray GA,
Hahn MW,
Abouheif E et al.
(2003)
The evolution of transcriptional regulation in eukaryotes.
Molecular Biology and Evolution
20: 13771419.
|
| Further Reading |
|
|
Adams MD
(2005)
Conserved sequences and the evolution of gene regulatory signals.
Current Opinion in Genetics & Development
15: 628633.
|
|
|
Caminci P,
Sandelin A,
Lenhard B et al.
(2006)
Genome-wide analysis of mammalian promoter architecture and evolution.
Nature Geneties
38: 626635.
|
|
|
ENCODE Project Consortium
(2007)
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project.
Nature
447: 799816.
|
|
|
Sun H,
Skogerbo G and
Chen R
(2006)
Conserved distances between vertebrate highly conserved elements.
Human Molecular Genetics
15: 29112922.
|