DNA Demethylation

The enzymatic modification of deoxyribonucleic acid (DNA) by demethylation of cytosine residues has been observed in several biological systems. The mechanism of DNA demethylation and the enzymes responsible for it remain obscure.

Keywords: cytosine; methylation; DNA methyltransferase; DNA; 5-methylcytosine

Figure 1. Cytosine and 5-methylcytosine. The enzymatic process of DNA methylation converts cytosine to 5-methylcytosine. DNA demethylation converts 5-methylcytosine to cytosine.
Figure 2. The top half of the figure depicts a methylated DNA molecule undergoing DNA replication followed by maintenance methylation. This process ensures faithful propagation of DNA methylation on both strands throughout multiple rounds of replication. If maintenance methylation does not occur following replication, methylation is present on only one strand as depicted in the lower half of the figure. Further rounds of DNA replication in the absence of maintenance methylation lead to an accumulation of double-stranded DNA molecules without cytosine methylation.
Figure 3. A CpG dinucleotide is depicted along with graphical representations of the potential enzymatic mechanisms leading to DNA demethylation: direct excision of the methyl group by an active demethylase, base excision by a DNA glycosylase and nucleotide excision by an endonuclease are depicted.
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 References
    Bestor TH (2000) The DNA methyltransferases of mammals. Human Molecular Genetics 9: 2395–2402.
    Bhattacharya SK, Ramchandani S, Cervoni N and Szyf M (1999) A mammalian protein with specific demethylase activity for mCpG DNA. Nature 397: 579–583.
    Cedar H and Verdine GL (1999) Gene expression. The amazing demethylase. Nature 397: 568–569.
    Hendrich B, Guy J, Ramsahoye B, Wilson VA and Bird A (2001) Closely related proteins MBD2 and MBD3 play distinctive but interacting roles in mouse development. Genes and Development 15: 710–723.
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    Ng HH, Zhang Y, Hendrich B, et al. (1999) MBD2 is a transcriptional repressor belonging to the MeCP1 histone deacetylase complex. Nature Genetics 23: 58–61.
    Santos F, Hendrich B, Reik W and Dean W (2002) Dynamic reprogramming of DNA methylation in the early mouse embryo. Developmental Biology 241: 172–182.
    Wade PA, Gegonne A, Jones PL, et al. (1999) Mi-2 complex couples DNA methylation to chromatin remodelling and histone deacetylation. Nature Genetics 23: 62–66.
    Weiss A, Keshet I, Razin A and Cedar H (1996) DNA demethylation in vitro: involvement of RNA. Cell 86: 709–718.
 Further Reading
    Bird A (2002) DNA methylation patterns and epigenetic memory. Genes and Development 16: 6–21.
    Li E, Bestor TH and Jaenisch R (1992) Targeted mutation of the DNA methyltransferase gene results in embryonic lethality. Cell 69: 915–926.
    Okano M, Bell DW, Haber DA and Li E (1999) DNA methyltransferases Dnmt3a and Dnmt3b are essential for de novo methylation and mammalian development. Cell 99: 247–257.
    Zhu B, Benjamin D, Zheng Y, et al. (2001) Overexpression of 5-methylcytosine DNA glycosylase in human embryonic kidney cells EcR293 demethylates the promoter of a hormone-regulated reporter gene. Proceedings of the National Academy of Sciences of the United States of America 98: 5031–5036.
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How to Cite close
Wade, Paul A(Jan 2006) DNA Demethylation. In: eLS. John Wiley & Sons Ltd, Chichester. http://www.els.net [doi: 10.1038/npg.els.0006161]