| References |
|
|
Bouwmeester T,
Bauch A,
Ruffner H et al.
(2004)
A physical and functional map of the human TNF-alpha NF-kappa B signal transduction pathway.
Nature Cell Biology
6: 97.
|
|
|
Burckstummer T,
Bennett KL,
Preradovic A et al.
(2006)
An efficient tandem affinity purification procedure for interaction proteomics in mammalian cells.
Nature Methods
3: 1013–1019.
|
|
|
Butland G,
Peregrin-Alvarez JM,
Li J et al.
(2005)
Interaction network containing conserved and essential protein complexes in E. coli.
Nature
433: 531–537.
|
|
|
Chiu YL,
Witkowska HE,
Hall SC et al.
(2006)
High-molecular-mass APOBEC3G complexes restrict Alu retrotransposition.
Proceedings of the National Academy of Sciences of the USA
103: 15588–15593.
|
|
|
van Esse HP,
Thomma BP, van’t Klooster JW and
de Wit PJ
(2006)
Affinity-tags are removed from Cladosporium fulvum effector proteins expressed in the tomato leaf apoplast.
Journal of Experimental Botany
57: 599–608.
|
|
|
Estevez AM,
Kempf T and
Clayton C
(2001)
The exosome of Trypanosoma brucei.
Embo Journal
20: 3831–3839.
|
|
|
Fields S and
Song O
(1989)
A novel genetic system to detect protein–protein interactions.
Nature
340: 245–246.
|
|
|
Forler D,
Kocher T,
Rode M et al.
(2003)
An efficient protein complex purification method for functional proteomics in higher eukaryotes.
Nature Biotechnology
21: 89–92.
|
|
|
Fromont-Racine M,
Rain JC and
Legrain P
(1997)
Toward a functional analysis of the yeast genome through exhaustive two-hybrid screens.
Nature Genetics
16: 277–282.
|
|
|
Gavin AC,
Aloy P,
Grandi P et al.
(2006)
Proteome survey reveals modularity of the yeast cell machinery.
Nature
440: 631–636.
|
|
|
Gavin AC,
Bosche M,
Krause R et al.
(2002)
Functional organization of the yeast proteome by systematic analysis of protein complexes.
Nature
415: 141–147.
|
|
|
Gordon GW,
Berry G,
Liang XH,
Levine B and
Herman B
(1998)
Quantitative fluorescence resonance energy transfer measurements using fluorescence microscopy.
Biophysics Journal
74: 2702–2713.
|
|
|
Kerppola TK
(2006)
Visualization of molecular interactions by fluorescence complementation.
Nature Reviews Molecular Cell Biology
7: 449–456.
|
|
|
Krogan NJ,
Cagney G,
Yu HY et al.
(2006)
Global landscape of protein complexes in the yeast Saccharomyces cerevisiae.
Nature
440: 637–643.
|
|
|
Li Q,
Dai XD,
Shen PY et al.
(2004)
A modified mammalian tandem affinity purification procedure to prepare functional polycystin-2 channel.
FEBS Letters
576: 231–236.
|
|
|
Rigaut G,
Shevchenko A,
Rutz B et al.
(1999)
A generic protein purification method for protein complex characterization and proteome exploration.
Nature Biotechnology
17: 1030–1032.
|
|
|
Rohila JS,
Chen M,
Cerny R and
Fromm ME
(2004)
Improved tandem affinity purification tag and methods for isolation of protein heterocomplexes from plants.
Plant Journal
38: 172–181.
|
|
|
Rohila JS,
Chen M,
Chen S et al.
(2006)
Protein–protein interactions of tandem affinity purification-tagged protein kinases in rice.
Plant Journal
46: 1–13.
|
|
|
Rubio V,
Shen YP,
Saijo Y et al.
(2005)
An alternative tandem affinity purification strategy applied to Arabidopsis protein complex isolation.
Plant Journal
41: 767–778.
|
|
|
Soderberg O,
Gullberg M,
Jarvius M et al.
(2006)
Direct observation of individual endogenous protein complexes in situ by proximity ligation.
Nature Methods
3: 995–1000.
|
|
|
Tasto JJ,
Carnahan RH,
McDonald WH and
Gould KL
(2001)
Vectors and gene targeting modules for tandem affinity purification in Schizosaccharomyces pombe.
Yeast
18: 657–662.
|
|
|
Veraksa A,
Bauer A, and
Artavanis-Tsakonas S
(2005)
Analyzing protein complexes in Drosophila with tandem affinity purification-mass spectrometry.
Developmental Dynamics
232: 827–834.
|
|
|
Wallrabe H and
Periasamy A
(2005)
Imaging protein molecules using FRET and FLIM microscopy.
Current Opinion in Biotechnology
16: 19–27.
|
|
|
Yang P,
Sampson HM and
Krause HM
(2006)
A modified tandem affinity purification strategy identifies cofactors of the Drosophila nuclear receptor dHNF4.
Proteomics
6: 927–935.
|
| Further Reading |
|
|
Bauer A and
Kuster B
(2003)
Affinity purification-mass spectrometry – Powerful tools for the characterization of protein complexes.
European Journal of Biochemistry
270: 570–578.
|
|
|
Chang IF
(2006)
Mass spectrometry-based proteomic analysis of the epitope-tag affinity purified protein complexes in eukaryotes.
Proteomics
6: 6158–6166.
|
|
|
Downard KM
(2006)
Ions of the interactome: The role of MS in the study of protein interactions in proteomics and structural biology.
Proteomics
6: 5374–5384.
|
|
|
Kuroda K,
Kato M,
Mima J and
Ueda M
(2006)
Systems for the detection and analysis of protein–protein interactions.
Applied Microbiology and Biotechnology
71: 127–136.
|
|
|
Puig O,
Caspary F,
Rigaut G et al.
(2001)
The tandem affinity purification (TAP) method: a general procedure of protein complex purification.
Methods
24: 218–229.
|
|
|
Suter B,
Auerbach D and
Stagljar I
(2006)
Yeast-based functional genomics and proteomics technologies: the first 15 years and beyond.
Biotechniques
40: 625–644.
|
|
|
Tsai A and
Carstens RP
(2007)
An optimized protocol for protein purification in cultured mammalian cells using a tandem affinity purification approach.
Nature Protocols
1: 2820–2827.
|
|
|
Vasilescu J and
Figeys D
(2006)
Mapping protein-protein interactions by mass spectrometry.
Current Opinion in Biotechnology
17: 394–399.
|
