| References |
|
|
Aertsen A and
Michiels CW
(2006)
Upstream of the SOS response: figure out the trigger.
Trends in Microbiology
14:
421–423.
|
|
|
Battesti A,
Majdalani N and
Gottesman S
(2011)
The RpoS-mediated general stress response in Escherichia coli.
Annual Review of Microbiology
65:
189–213.
|
|
|
Bhamre S,
Gadea BB,
Koyama CA et al.
(2001)
An aerobic recA-, umuC-dependent pathway of spontaneous base-pair substitution mutagenesis in E. coli.
Mutation Research
473:
229–247.
|
|
|
Bharatan SM,
Reddy M and
Gowrishankar J
(2004)
Distinct signatures for mutator sensitivity of lacZ reversions and for the spectrum of lacI/lacO forward mutations on the chromosome of nondividing. E. coli.
Genetics
166:
681–692.
|
|
|
Bjedov I,
Tenaillon O,
Gerard B et al.
(2003)
Stress-induced mutagenesis in bacteria.
Science
300:
1404–1409.
|
|
|
Cohen SE and
Walker GC
(2011)
New discoveries linking transcription to DNA repair and damage tolerance pathways.
Transcription
2:
37–40.
|
|
|
Costanzo A,
Nicoloff H,
Barchinger SE et al.
(2008)
ppGpp and DksA likely regulate the activity of the extracytoplasmic stress factor sigmaE in E. coli by both direct and indirect mechanisms.
Molecular Microbiology
67:
619–632.
|
|
|
Donnelly CE and
Walker GC
(1992)
Coexpression of UmuD’ with UmuC suppresses the UV mutagenesis deficiency of groE mutants.
Journal of Bacteriology
174:
3133–3139.
|
|
|
Dri A-M and
Moreau PL
(1994)
Control of the LexA regulon by pH: evidence for a reversible inactivation of the LexA repressor during the growth cycle of E. coli.
Molecular Microbiology
12:
621–629.
|
|
|
Drlica K
(1999)
Mechanism of fluoroquinolone action.
Current Opinion in Microbiology
2:
504–508.
|
|
|
Durfee T,
Hansen AM,
Zhi H et al.
(2008)
Transcription profiling of the stringent response in E. coli.
Journal of Bacteriology
190:
1084–1096.
|
|
|
Finkel SE
(2006)
Long-term survival during stationary phase: evolution and the GASP phenotype.
Nature Reviews Microbiology
4:
113–120.
|
|
|
Foster PL
(1993)
Adaptive mutation: the uses of adversity.
Annual Review of Microbiology
47:
467–504.
|
|
|
Foster PL
(2007)
Stress-induced mutagenesis in bacteria.
Critical Reviews in Biochemistry and Molecular Biology
42:
373–397.
|
|
|
Foster PL,
Trimarchi JM and
Maurer RA
(1996)
Two enzymes, both of which process recombination intermediates, have opposite effects on adaptive mutation in E coli.
Genetics
142:
25–37.
|
|
|
Giangrossi M,
Giuliodori AM,
Gualerzi CO et al.
(2002)
Selective expression of the beta-subunit of nucleoid-associated protein HU during cold shock in E. coli.
Molecular Microbiology
44:
205–216.
|
|
|
Godoy VG,
Jarosz DF,
Simon SM et al.
(2007)
UmuD and RecA directly modulate the mutagenic potential of the Y family DNA polymerase DinB.
Molecular Cell
28:
1058–1070.
|
|
|
Hall BG
(1998)
Activation of the bgl operon by adaptive mutation.
Molecular Biology and Evolution
15:
1–5.
|
|
|
Janion C,
Sikora A,
Nowosielska A et al.
(2002)
Induction of the SOS response in starved E. coli.
Environmental and Molecular Mutagenesis
40:
129–133.
|
|
|
Kelley WL
(2006)
Lex marks the spot: the virulent side of SOS and a closer look at the LexA regulon.
Molecular Microbiology
62:
1228–1238.
|
|
|
Kim SR,
Matsui K,
Yamada M et al.
(2001)
Roles of chromosomal and episomal dinB genes encoding DNA Pol IV in targeted and untargeted mutagenesis in E. coli.
Molecular Genetics and Genomics
266:
207–215.
|
|
|
Kivisaar M
(2010)
Mechanisms of stationary-phase mutagenesis in bacteria: mutational processes in pseudomonads.
FEMS Microbiology Letters
312:
1–14.
|
|
|
Kornberg A,
Rao NN and
Ault-Riche D
(1999)
Inorganic polyphosphate: a molecule of many functions.
Annual Review of Biochemistry
68:
89–125.
|
|
|
Layton JC and
Foster PL
(2003)
Error-prone DNA polymerase IV is controlled by the stress-response sigma factor, RpoS, in E. coli.
Molecular Microbiology
50:
549–561.
|
|
|
Layton JC and
Foster PL
(2005)
Error-prone DNA polymerase IV is regulated by the molecular chaperon GroE in E. coli.
Journal of Bacteriology
187:
449–457.
|
|
|
Little JW
(1991)
Mechanism of specific LexA cleavage: autodigestion and the role of RecA coprotease.
Biochimie
73:
411–421.
|
|
|
Luria SE and
Delbrück M
(1943)
Mutations of bacteria from virus sensitivity to virus resistance.
Genetics
28:
491–511.
|
|
|
McCool JD,
Long E,
Petrosino JF et al.
(2004)
Measurement of SOS expression in individual E. coli K-12 cells using fluorescence microscopy.
Molecular Microbiology
53:
1343–1357.
|
|
|
Miller C,
Thomsen LE,
Gaggero C et al.
(2004)
SOS response induction by -lactams and bacterial defense against antibiotic lethality.
Science
305:
1629–1631.
|
|
|
Naas T,
Blot M,
Fitch WM et al.
(1994)
Insertion sequence-related genetic variation in resting E. coli K-12.
Genetics
136:
721–730.
|
|
|
Potrykus K and
Cashel M
(2008)
(p)ppGpp: still magical?
Annual Reviews of Microbiology
62:
35–51.
|
|
|
Robleto EA,
Yasbin R,
Ross C et al.
(2007)
Stationary phase mutagenesis in B. subtilis: a paradigm to study genetic diversity programs in cells under stress.
Critical Reviews in Biochemistry and Molecular Biology
42:
327–339.
|
|
|
Roth JR,
Kugelberg E,
Reams AB et al.
(2006)
Origin of mutations under selection: the adaptive mutation controversy.
Annual Review of Microbiology
60:
477–501.
|
|
|
Saxowsky TT and
Doetsch PW
(2006)
RNA polymerase encounters with DNA damage: transcription-coupled repair or transcriptional mutagenesis?
Chemical Reviews
106:
474–488.
|
|
|
Seufferheld MJ,
Alvarez HM and
Farias ME
(2008)
Role of polyphosphates in microbial adaptation to extreme environments.
Applied and Environmental Microbiology
74:
5867–5874.
|
|
|
Shapiro JA
(2009)
Letting E. coli teach me about genome engineering.
Genetics
183:
1205–1214.
|
|
|
Shiba T,
Tsutsumi K,
Yano H et al.
(1997)
Inorganic polyphosphate and the induction of rpoS expression.
Proceedings of the National Academy of Sciences of the USA
94:
11210–11215.
|
|
|
Storvik KA and
Foster PL
(2010)
RpoS, the stress response sigma factor, plays a dual role in the regulation of E. coli's error-prone DNA polymerase IV.
Journal of Bacteriology
192:
3639–3644.
|
|
|
Stumpf JD and
Foster PL
(2005)
Polyphosphate kinase regulates error-prone replication by DNA polymerase IV in E. coli.
Molecular Microbiology
57:
751–761.
|
|
|
Taddei F,
Halliday JA,
Matic I et al.
(1997)
Genetic analysis of mutagenesis in aging E. coli colonies.
Molecular and General Genetics
256:
277–281.
|
|
|
Taddei F,
Matic I and
Radman M
(1995)
cAMP-dependent SOS induction and mutagenesis in resting bacterial populations.
Proceedings of the National Academy of Sciences of the USA
92:
11736–11740.
|
|
|
Taverna P and
Sedgwick B
(1996)
Generation of an endogenous DNA-methylating agent by nitrosation in E. coli.
Journal of Bacteriology
178:
5105–5111.
|
|
|
Timms AR,
Muriel W and
Bridges BA
(1999)
A UmuD,C-dependent pathway for spontaneous G:C to C:G transversions in stationary phase E. coli.
Mutation Research
435:
77–80.
|
|
|
Tsui H-CT,
Feng G and
Winkler ME
(1997)
Negative regulation of mutS and mutH repair gene expression by the Hfq and RpoS global regulators of E. coli K-12.
Journal of Bacteriology
179:
7476–7487.
|
|
|
Tsutsumi K,
Munekata M and
Shiba T
(2000)
Involvement of inorganic polyphosphate in expression of SOS genes.
Biochimica et Biophysica Acta
1493:
73–81.
|
|
|
Twiss E,
Coros AM,
Tavakoli NP et al.
(2005)
Transposition is modulated by a diverse set of host factors in E. coli and is stimulated by nutritional stress.
Molecular Microbiology
57:
1593–1607.
|
|
|
Williams AB and
Foster PL
(2007)
The E. coli histone-like protein HU has a role in stationary phase adaptive mutation.
Genetics
177:
723–735.
|
|
|
Wrande M,
Roth JR and
Hughes D
(2008)
Accumulation of mutants in ‘aging’ bacterial colonies is due to growth under selection, not stress-induced mutagenesis.
Proceedings of the National Academy of Sciences of the USA
105:
11863–11868.
|
|
|
Wright BE
(2004)
Stress-directed adaptive mutations and evolution.
Molecular Microbiology
52:
643–650.
|
|
|
book
Yura T,
Kanemori M and
Morita MT
(2000)
"The heat shock response: regulation and function".
In: Storz G and
Hengge-Aronis R (eds)
Bacterial Stress Responses,
pp. 3–18.
Washington: ASM Press.
|
| Further Reading |
|
|
Brown MR and
Kornberg A
(2004)
Inorganic polyphosphate in the origin and survival of species.
Proceedings of the National Academy of Sciences of the USA
101:
16085–16087.
|
|
|
Cairns J
(1998)
Mutation and cancer: the antecedents to our studies of adaptive mutation.
Genetics
148:
1433–1440.
|
|
|
Cairns J,
Overbauch J and
Miller S
(1988)
The origin of mutants.
Nature
335:
142–145.
|
|
|
book
Friedberg EC,
Walker GC,
Siede W et al.
(2006)
DNA Repair and Mutagenesis,
2nd edn,
pp. 1–1118.
Washington, DC: ASM Press.
|
|
|
book
Storz G and
Hengge R
(2011)
Bacterial Stress Responses,
2nd edn,
pp. 1–506.
Washington, DC: ASM Press.
|
|
|
book
Williams AB and
Foster PL
(2012)
"Module 7.2.3. Stress-induced mutagenesis".
In: Böck A,
Curtiss R III,
Kaper JB et al. (eds)
EcoSal – Escherichia coli and Salmonella: Cellular and Molecular Biology.
Washington, DC: ASM Press. http://www.ecosal.org.
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