| References |
|
|
Adams JC and
Lawler J
(2011)
The thrombospondins.
Cold Spring Harbor Perspectives in Biology
3(10):
a009712. doi: 10.1101/cshperspect.a009712.
|
|
|
Bentley AA and
Adams JC
(2010)
The evolution of thrombospondins and their ligand-binding activities.
Molecular Biology and Evolution
27:
2187–2197.
|
|
|
Bittencourt D,
Oliveira PF,
Prosdocimi F and
Rech EL
(2012)
Protein families, natural history and biotechnological aspects of spider silk.
Genetics and Molecular Research
11:
2360–2380.
|
|
|
Boute N,
Exposito JY,
Boury-Esnault N et al.
(1996)
Type IV collagen in sponges, the missing link in basement membrane Ubiquity.
Biology of the Cell
88:
37–44.
|
|
|
Bunch TA,
Graner MW,
Fessler LI et al.
(1998)
The PS2 integrin ligand tiggrin is required for proper muscle function in Drosophila.
Development
125:
1679–1689.
|
|
|
Chanana B,
Graf R,
Koledachkina T,
Pflanz R and
Vorbrüggen G
(2007)
AlphaPS2 integrin-mediated muscle attachment in Drosophila requires the ECM protein thrombospondin.
Mechanisms of Devlopment
124:
463–475.
|
|
|
Chapman JA,
Kirkness EF and
Simakov O
(2010)
The dynamic genome of Hydra.
Nature
464:
592–596.
|
|
|
Christoffels A,
Koh EG,
Chia JM et al.
(2004)
Fugu genome analysis provides evidence for a whole-genome duplication early during the evolution of ray-finned fishes.
Molecular Biology and Evolution
21:
1146–1151.
|
|
|
Clemetson KJ
(2012)
Platelets and primary haemostasis.
Thrombosis Research
129:
220–224.
|
|
|
Couchman JR
(2010)
Transmembrane signaling proteoglycans.
Annual Review of Cell and Developmental Biology
26:
89–114.
|
|
|
Davis MR and
Summers KM
(2012)
Structure and function of the mammalian fibrillin gene family: Implications for human connective tissue diseases.
Molecular Genetics and Metabolism
107:
635–647.
|
|
|
Deutzmann R,
Fowler S,
Zhang X et al.
(2000)
Molecular, biochemical and functional analysis of a novel and developmentally important fibrillar collagen (Hcol-I) in hydra.
Development
127:
4669–4680.
|
|
|
Domogatskaya A,
Rodin S and
Tryggvason K
(2012)
Functional diversity of laminins.
Annual Review of Cell and Developmental Biology
28:
523–553.
|
|
|
Exposito JY,
Larroux C,
Cluzel C et al.
(2008)
Demosponge and sea anemone fibrillar collagen diversity reveals the early emergence of A/C clades and the maintenance of the modular structure of type V/XI collagens from sponge to human.
Journal of Biological Chemistry
283:
28226–28235.
|
|
|
Fogerty FJ,
Fessler LI,
Bunch TA et al.
(1994)
Tiggrin, a novel Drosophila extracellular matrix protein that functions as a ligand for Drosophila alpha PS2 beta PS integrins.
Development
120:
1747–1758.
|
|
|
Fowler SJ,
Jose S,
Zhang X et al.
(2000)
Characterization of hydra type IV collagen. Type IV collagen is essential for head regeneration and its expression is up-regulated upon exposure to glucose.
Journal of Biological Chemistry
275:
39589–39599.
|
|
|
Hegedus D,
Erlandson M,
Gillott C and
Toprak U
(2009)
New insights into peritrophic matrix synthesis, architecture, and function.
Annual Review of Entomology
54:
285–302.
|
|
|
Heinemann S,
Ehrlich H,
Douglas T et al.
(2007)
Ultrastructural studies on the collagen of the marine sponge Chondrosia reniformis Nardo.
Biomacromolecules
8:
3452–3457.
|
|
|
Huxley-Jones J,
Robertson DL and
Boot-Handford RP
(2007)
On the origins of the extracellular matrix in vertebrates.
Matrix Biology
26:
2–11.
|
|
|
Hynes RO
(2002)
Integrins: bidirectional, allosteric signaling machines.
Cell
110:
673–687.
|
|
|
Hynes RO and
Naba A
(2012)
Overview of the matrisome – an inventory of extracellular matrix constituents and functions.
Cold Spring Harbor Perspectives in Biology
4(1):
a004903.
|
|
|
Jeffery WR,
Chiba T,
Krajka FR et al.
(2008)
Trunk lateral cells are neural crest-like cells in the ascidian Ciona intestinalis: insights into the ancestry and evolution of the neural crest.
Developmental Biology
324:
152–160.
|
|
|
Joubert C,
Piquemal D,
Marie B et al.
(2010)
Transcriptome and proteome analysis of Pinctada margaritifera calcifying mantle and shell: focus on biomineralization.
BMC Genomics
11:
613.
|
|
|
Kawashima T,
Kawashima S,
Tanaka C et al.
(2009)
Domain shuffling and the evolution of vertebrates.
Genome Research
19:
1393–1403.
|
|
|
King N,
Westbrook MJ,
Young SL et al.
(2008)
The genome of the choanoflagellate Monosiga brevicollis and the origin of metazoans.
Nature
451:
783–788.
|
|
|
Kluge JA,
Rabotyagova O,
Leisk GG and
Kaplan DL
(2008)
Spider silks and their applications.
Trends in Biotechnology
26:
244–251.
|
|
|
Lang T,
Hansson GC and
Samuelsson T
(2007)
Gel-forming mucins appeared early in metazoan evolution.
Proceedings of the National Academy of Sciences of the USA
104:
16209–16214.
|
|
|
Mann K,
Edsinger-Gonzales E and
Mann M
(2012)
In-depth proteomic analysis of a mollusc shell: acid-soluble and acid-insoluble matrix of the limpet Lottia gigantea.
Proteome Science
10(1):
28.
|
|
|
Marin F,
Luquet G,
Marie B and
Medakovic D
(2008)
Molluscan shell proteins: primary structure, origin, and evolution.
Current Topics in Developmental Biology
80:
209–276.
|
|
|
McKenzie P,
Chadalavada SC,
Bohrer J and
Adams JC
(2006)
Phylogenomic analysis of vertebrate thrombospondins reveals fish-specific paralogues, ancestral gene relationships and a tetrapod innovation.
BMC Evolutionary Biology
6:
33.
|
|
|
McLysaght A,
Hokamp K and
Wolfe KH
(2002)
Extensive genomic duplication during early chordate evolution.
Nature Reviews Genetics
31:
200–204.
|
|
|
Merzendorfer H
(2011)
The cellular basis of chitin synthesis in fungi and insects: common principles and differences.
European Journal of Cell Biology
90:
759–769.
|
|
|
Özbek S,
Balasubramainian P,
Chiquet-Ehrismann R,
Tucker RP and
Adams JC
(2010)
The evolution of extracellular matrix.
Molecular Biology and Cell
21:
4300–4306.
|
|
|
Page AP and
Johnstone IL
(2007)
The cuticle.
WormBook
19:
1–15.
|
|
|
Putnam NH,
Srivastava M,
Hellsten U et al.
(2007)
Sea anemone genome reveals ancestral eumetazoan gene repertoire and genomic organization.
Science
317:
86–94.
|
|
|
Reber-Müller S,
Spissinger T,
Schuchert P,
Spring J and
Schmid V
(1995)
An extracellular matrix protein of jellyfish homologous to mammalian fibrillins forms different fibrils depending on the life stage of the animal.
Developmental Biology
169:
662–672.
|
|
|
Rubin GM,
Yandell MD,
Wortman JR et al.
(2000)
Comparative genomics of the eukaryotes.
Science
287:
2204–2215.
|
|
|
Schierwater B,
de Jong D and
Desalle R
(2009)
Placozoa and the evolution of Metazoa and intrasomatic cell differentiation.
International Journal of Biochemistry and Cell Biology
41:
370–379.
|
|
|
Sebé-Pedrós A,
Roger AJ,
Lang FB,
King N and
Ruiz-Trillo I
(2010)
Ancient origin of the integrin-mediated adhesion and signaling machinery.
Proceedings of the National Academy of Sciences of the USA
107:
10142–10147.
|
|
|
Shimizu H,
Aufschnaiter R,
Li L et al.
(2008)
The extracellular matrix of hydra is a porous sheet and contains type IV collagen.
Zoology
111:
410–418.
|
|
|
Shinzato C,
Shoguchi E,
Kawashima T et al.
(2011)
Using the Acropora digitifera genome to understand coral responses to environmental change.
Nature
476:
320–323.
|
|
|
Srivastava M,
Begovic E,
Chapman J et al.
(2008)
The Trichoplax genome and the nature of placozoans.
Nature
454:
955–960.
|
|
|
Srivastava M,
Simakov O,
Chapman J et al.
(2010)
The Amphimedon queenslandica genome and the evolution of animal complexity.
Nature
466:
720–726.
|
|
|
Subramanian A,
Wayburn B,
Bunch T and
Volk T
(2007)
Thrombospondin-mediated adhesion is essential for the formation of the myotendinous junction in Drosophila.
Development
134:
1269–1278.
|
|
|
Tucker RP,
Hess J,
Drabikowski K et al.
(2006)
Phylogenetic analysis of the tenascin gene family: evidence of origin early in the chordate lineage.
BMC Evolutionary Biology
6:
60.
|
|
|
Wada H
(2010)
Origin and genetic evolution of the vertebrate skeleton.
Zoological Science
27:
119–123.
|
|
|
Waite JH,
Qin XX and
Coyne KJ
(1998)
The peculiar collagens of mussel byssus.
Matrix Biology
17:
93–106.
|
|
|
Whittaker CA,
Bergeron KF,
Whittle J et al.
(2006)
The echinoderm adhesome.
Developmental Biology
300:
252–266.
|
|
|
Willis JH
(2010)
Structural cuticular proteins from arthropods: annotation, nomenclature, and sequence characteristics in the genomics era.
Insect Biochemistry and Molecular Biology
40:
189–204.
|
|
|
Zhang G and
Cohn MJ
(2006)
Hagfish and lancelet fibrillar collagens reveal that type II collagen-based cartilage evolved in stem vertebrates.
Proceedings of the National Academy of Sciences of the USA
103:
16829–16833.
|
|
|
Zhang X,
Fei K,
Agbas A et al.
(2002)
Structure and function of an early divergent form of laminin in hydra: a structurally conserved ECM component that is essential for epithelial morphogenesis.
Development Genes and Evolution
212:
159–172.
|
| Further Reading |
|
|
Adams JC and
Engel J
(2007)
Bioinformatic analysis of adhesion proteins.
Methods in Molecular Biology
370:
147–171.
|
|
|
ePath Animal phylogeny and biodiversity: Tree of Life web project. http://tolweb.org/
|
|
|
Dehal P and
Boore JL
(2005)
Two rounds of whole genome duplication in the ancestral vertebrate.
PLoS Biology
3:
e314.
|
|
|
Ereskovsky AV,
Borchiellini C,
Gazave E et al.
(2009)
The Homoscleromorph sponge Oscarella lobularis, a promising sponge model in evolutionary and developmental biology: model sponge Oscarella lobularis.
Bioessays
31:
89–97.
|
|
|
book
Hynes RO and
Yamada KM (eds)
(2012)
Extracellular Matrix Biology. CSHL Perspectives in Biology Series,
387 pp.
New York: Cold Spring Harbor Laboratory Press. ISBN: 978-1-936113-38-5.
|
|
|
book
Keely FW and
Mecham RP (eds)
(2013) (in press)
Evolution of Extracellular Matrix.
Berlin: Springer Verlag.
|
|
|
King N
(2004)
The unicellular ancestry of animal development.
Developmental Cell
7:
313–325.
|
|
|
Meyer A and
Van de Peer Y
(2005)
From 2R to 3R: evidence for a fish-specific genome duplication (FSGD).
Bioessays
27:
937–945.
|
|
|
Rauscher S and
Pomès R
(2012)
Structural disorder and protein elasticity.
Advances in Experimental Medicine and Biology
725:
159–183.
|
|
|
Robertson I,
Jensen S and
Handford P
(2011)
TB domain proteins: evolutionary insights into the multifaceted roles of fibrillins and LTBPs.
Biochemical Journal
433:
263–276.
|
