References
Alcázar
R
,
García
AV
,
Kronholm
I
, et al. (2010) Natural variation at Strubbelig Receptor Kinase 3 drives immune‐triggered incompatibilities between Arabidopsis thaliana accessions. Nature Genetics
42: 1135–1139.
Alcázar
R
,
García
AV
,
Parker
JE
and
Reymond
M
(2009) Incremental steps toward incompatibility revealed by Arabidopsis epistatic interactions modulating salicylic acid pathway activation. Proceedings of the National Academy of Sciences of the United States of America
106: 334–339.
Bayes
JJ
and
Malik
HS
(2009) Altered heterochromatin binding by a hybrid sterility protein in Drosophila sibling species. Science
326: 1538–1541.
Bikard
D
,
Patel
D
,
Le
Metté
C
, et al. (2009) Divergent evolution of duplicate genes leads to genetic incompatibilities within A. thaliana
. Science
323: 623–626.
Blevins
T
,
Wang
J
,
Pflieger
D
,
Pontvianne
F
and
Pikaard
CS
(2017) Hybrid incompatibility caused by an epiallele. Proceedings of the National Academy of Sciences of the United States of America
114: 4–9.
Bomblies
K
,
Lempe
J
,
Epple
P
, et al. (2007) Autoimmune response as a mechanism for a Dobzhansky‐Muller‐type incompatibility syndrome in plants. PLoS Biology
5: 1962–1972.
Bouche
N
,
Strand
EP
and
Bourgin
IJ
(2012) Report rapid establishment of genetic incompatibility through natural epigenetic variation. Current Biology
22: 326–331.
Burkart‐Waco
D
,
Josefsson
C
,
Dilkes
B
, et al. (2012) Hybrid incompatibility in Arabidopsis is determined by a multiple‐locus genetic network. Plant Physiology
158: 801–812.
Case
AL
,
Finseth
FR
,
Barr
CM
and
Fishman
L
(2016) Selfish evolution of cytonuclear hybrid incompatibility in Mimulus
. Proceedings of the Royal Society B: Biological Sciences
283.
Chae
E
,
Bomblies
K
,
Kim
S‐T
, et al. (2014) Species‐wide genetic incompatibility analysis identifies immune genes as Hot spots of deleterious epistasis. Cell
159: 1341–1351.
Chen
C
,
Chen
H
,
Lin
Y‐S
, et al. (2014) A two‐locus interaction causes interspecific hybrid weakness in rice. Nature Communications
5: 3357.
Chen
C
,
E
and
Lin
H
(2016) Evolution and molecular control of hybrid incompatibility in plants. Frontiers in Plant Science
7: 1208.
Chen
L
and
Liu
Y‐G
(2014) Male sterility and fertility restoration in crops. Annual Review of Plant Biology
65: 579–606.
Chu
Y
and
Oka
H
(1970) The genetic basis of crossing barriers between Oryza perennis subsp. barthii and its related taxa. Evolution
24: 135–144.
Coyne
JA
and
Orr
HA
(2004) Speciation. Sunderland, MA: Sinauer Associates.
Cui
X
,
Wise
RP
and
Schnable
PS
(1996) The rf2 nuclear restorer gene of male‐sterile T‐cytoplasm maize. Science
272: 1334–1336.
Duxbury
Z
,
Ma
Y
,
Furzer
OJ
, et al. (2016) Pathogen perception by NLRs in plants and animals: parallel worlds. BioEssays
38: 769–781.
Fishman
L
and
Sweigart
AL
(2018) When two rights make a wrong: the evolutionary genetic of plant hybrid incompatabilities. Annual Review of Plant Biology
69: 1–25.
Florez‐Rueda
AM
,
Paris
M
,
Schmidt
A
, et al. (2016) Genomic imprinting in the endosperm is systematically perturbed in abortive hybrid tomato seeds. Molecular Biology and Evolution
33: 2935–2946.
Fujii
S
and
Toriyama
K
(2009) Suppressed expression of RETROGRADE‐REGULATED MALE STERILITY restores pollen fertility in cytoplasmic male sterile rice plants. Proceedings of the National Academy of Sciences
106: 9513–9518.
Garner
AG
,
Kenney
AM
,
Fishman
L
and
Sweigart
AL
(2016) Genetic loci with parent of origin effects cause hybrid seed lethality between Mimulus species. New Phytologist
211: 319–331.
Haig
D
and
Westoby
M
(1991) Genomic imprinting in endosperm: its effect on seed development in crosses between species, and between different ploidies of the same species, and its implications for the evolution of apomixis. Philosophical Transactions of the Royal Society, B: Biological Sciences
333: 1–13.
Ichitani
K
,
Takemoto
Y
,
Iiyama
K
,
Taura
S
and
Sato
M
(2012) Chromosomal location of HCA1 and HCA2, hybrid chlorosis genes in rice. International Journal of Plant Genomics
2012: 1–9.
Jeuken
MJW
,
Zhang
NW
,
McHale
LK
, et al. (2009) Rin4 causes hybrid necrosis and race‐specific resistance in an interspecific lettuce hybrid. The Plant Cell
21: 3368–3378.
Josefsson
C
,
Dilkes
B
and
Comai
L
(2006) Parent‐dependent loss of gene silencing during interspecies hybridization. Current Biology
16: 1322–1328.
Kirkbride
RC
,
Yu
HH
,
Nah
G
, et al. (2015) An epigenetic role for disrupted paternal gene expression in postzygotic seed abortion in Arabidopsis interspecific hybrids. Molecular Plant
8: 1766–1775.
Kradolfer
D
,
Wolff
P
,
Jiang
H
,
Siretskiy
A
and
Kohler
C
(2013) An imprinted gene underlies postzygotic reproductive isolation in Arabidopsis thaliana
. Developmental Cell
26: 525–535.
Lafon‐Placette
C
,
Johannessen
IM
,
Hornslien
KS
, et al. (2017) Endosperm‐based hybridization barriers explain the pattern of gene flow between Arabidopsis lyrata and Arabidopsis arenosa in Central Europe. Proceedings of the National Academy of Sciences of the United States of America
114: E1027–E1035.
Mizuta
Y
,
Harushima
Y
and
Kurata
N
(2010) Rice pollen hybrid incompatibility caused by reciprocal gene loss of duplicated genes. Proceedings of the National Academy of Sciences of the United States of America
107: 20417–20422.
Nguyen
GN
,
Yamagata
Y
,
Shigematsu
Y
,
Watanabe
M
and
Miyazaki
Y
(2017) Duplication and loss of function of genes encoding RNA polymerase III subunit C4 causes hybrid incompatibility in rice. Genes, Genomes, Genetics G3
7: 2565–2575.
Orr
HA
(1996) Dobzhansky, Bateson, and the genetics of speciation. Genetics
144: 1331–1335.
Pires
ND
and
Grossniklaus
U
(2014) Different yet similar: evolution of imprinting in flowering plants and mammals. F1000prime Reports
6: 63.
Plötner
B
,
Nurmi
M
,
Fischer
A
, et al. (2017) Chlorosis caused by two recessively interacting genes reveals a role of RNA helicase in hybrid breakdown in Arabidopsis thaliana
. Plant Journal
91: 251–262.
Presgraves
DC
(2010) The molecular evolutionary basis of species formation. Nature Reviews Genetics
11: 175–180.
Pukhalskiy
VA
,
Martynov
SP
and
Dobrotvorskaya
TV
(2000) Analysis of geographical and breeding‐related distribution of hybrid necrosis genes in bread wheat (Triticum aestivum L.). Euphytica
114: 233–240.
Rieseberg
LH
and
Blackman
BK
(2010) Speciation genes in plants. Annals of Botany
106: 439–455.
Sekine
D
,
Ohnishi
T
,
Furuumi
H
, et al. (2013) Dissection of two major components of the post‐zygotic hybridization barrier in rice endosperm. The Plant Journal: For Cell and Molecular Biology
76: 792–799.
Shen
R
,
Wang
L
,
Liu
X
, et al. (2017) Genomic structural variation‐mediated allelic suppression causes hybrid male sterility in rice. Nature Communications
8: 1310.
Sicard
A
,
Kappel
C
,
Josephs
EB
, et al. (2015) Divergent sorting of a balanced ancestral polymorphism underlies the establishment of gene‐flow barriers in Capsella
. Nature Communications
6: 7960.
Sweigart
AL
,
Fishman
L
and
Willis
JH
(2006) A simple genetic incompatibility causes hybrid male sterility in Mimulus
. Genetics
172: 2465–2479.
Sweigart
AL
and
Flagel
LE
(2015) Evidence of natural selection acting on a polymorphic hybrid incompatibility locus in Mimulus
. Genetics
199: 543–554.
Swiadek
M
,
Proost
S
,
Sieh
D
, et al. (2017) Novel allelic variants in ACD6 cause hybrid necrosis in local collection of Arabidopsis thaliana
. New Phytologist
213: 900–915.
Tang
H
,
Zheng
X
,
Li
C
, et al. (2017) Multi‐step formation, evolution, and functionalization of new cytoplasmic male sterility genes in the plant mitochondrial genomes. Cell Research
27: 130–146.
Todesco
M
,
Kim
ST
,
Chae
E
, et al. (2014) Activation of the Arabidopsis thaliana immune system by combinations of common ACD6 alleles. PLoS Genetics
10: e1004459.
Wang
P
,
Bai
W
,
Zheng
H
, et al. (2018) A selfish genetic element confers non‐Mendelian inheritance in rice. Science
360: 1130–1132.
Wolff
P
,
Jiang
H
,
Wang
G
,
Santos‐González
J
and
Köhler
C
(2015) Paternally expressed imprinted genes establish postzygotic hybridization barriers in Arabidopsis thaliana
. eLife
4: 1–14.
Wright
KM
,
Lloyd
D
,
Lowry
DB
,
Macnair
MR
and
Willis
JH
(2013) Indirect evolution of hybrid lethality due to linkage with selected locus in Mimulus guttatus
. PLoS Biology
11: e1001497.
Yamagata
Y
,
Yamamoto
E
,
Aya
K
, et al. (2010) Mitochondrial gene in the nuclear genome induces reproductive barrier in rice. Proceedings of the National Academy of Sciences of the United States of America
107: 1494–1499.
Yang
J
,
Zhao
X
,
Cheng
K
, et al. (2012) A killer‐protector system regulates both hybrid sterility and segregation distortion in rice. Science
337: 1336–1340.
Zuellig
MP
and
Sweigart
AL
(2018) Gene duplicates cause hybrid lethality between sympatric species of Mimulus
. PLoS Genetics
14: 1–20.
Further Reading
Baack
E
,
Melo
MC
,
Rieseberg
LH
and
Ortiz‐Barrientos
D
(2015) The origins of reproductive isolation in plants. New Phytologist
207: 968–984.
Bomblies
K
and
Weigel
D
(2007) Hybrid necrosis: autoimmunity as a potential gene‐flow barrier in plant species. Nature Reviews Genetics
8: 382–393.
Dempewolf
H
,
Hodgins
KA
,
Rummell
SE
,
Ellstrand
NC
and
Rieseberg
LH
(2012) Reproductive isolation during domestication. The Plant Cell
24: 2710–2717.
Lafon‐Placette
C
,
Vallejo‐Marín
M
,
Parisod
C
,
Abbott
RJ
and
Köhler
C
(2016) Current plant speciation research: unravelling the processes and mechanisms behind the evolution of reproductive isolation barriers. The New Phytologist
209: 29–33.
Maheshwari
S
and
Barbash
D
(2011) The genetics of hybrid incompatibilities. Annual Review of Genetics
45: 331–355.
Ouyang
Y
and
Zhang
Q
(2013) Understanding reproductive isolation based on the rice model. Annual Review of Plant Biology
64: 111–135.
Vaid
N
and
Laitinen
RAE
(2018) Diverse paths to hybrid incompatibility in Arabidopsis
. The Plant Journal: 1–15.